Variant report

Variant	rs59655257
Chromosome Location	chr3:141132499-141132500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141130048..141133212-chr3:141148834..141151163,3	MCF-7	breast:
2	chr3:141119395..141121846-chr3:141130487..141133374,3	K562	blood:
3	chr3:141085385..141089817-chr3:141128434..141134875,8	K562	blood:
4	chr3:141118092..141121599-chr3:141132205..141135279,4	MCF-7	breast:
5	chr3:141126040..141127652-chr3:141131247..141133290,2	MCF-7	breast:
6	chr3:141119734..141124291-chr3:141125562..141133374,8	K562	blood:

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction
ENSG00000249417	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16851365	1.00[AMR][1000 genomes]
rs16851408	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55755373	1.00[AMR][1000 genomes]
rs59876827	1.00[AMR][1000 genomes]
rs6764191	0.87[AFR][1000 genomes]
rs6790603	1.00[AMR][1000 genomes]
rs73869587	1.00[AMR][1000 genomes]
rs73869601	1.00[AMR][1000 genomes]
rs73872722	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7625729	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141126800-141138000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:141128600-141132800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr3:141129600-141133800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:141130200-141133600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chr3:141130600-141133600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:141131000-141132800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:141131000-141132800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:141131200-141139200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:141131400-141132800	Enhancers	Fetal Kidney	kidney
10	chr3:141131400-141134200	Enhancers	Primary T cells from cord blood	blood
11	chr3:141131600-141132600	Flanking Active TSS	Brain Cingulate Gyrus	brain
12	chr3:141131600-141133400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr3:141131600-141133400	Genic enhancers	Placenta	Placenta
14	chr3:141131600-141133600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:141131600-141133600	Genic enhancers	Fetal Stomach	stomach
16	chr3:141131600-141134200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr3:141131600-141134400	Genic enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:141131600-141138800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:141131600-141144400	Strong transcription	Fetal Intestine Large	intestine
20	chr3:141131600-141145200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:141131800-141132600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr3:141131800-141133000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr3:141131800-141133000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr3:141131800-141133000	Enhancers	Aorta	Aorta
25	chr3:141131800-141133200	Enhancers	Gastric	stomach
26	chr3:141131800-141133200	Enhancers	Spleen	Spleen
27	chr3:141131800-141133600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr3:141131800-141133600	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr3:141131800-141134000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:141131800-141134800	Genic enhancers	Osteobl	bone
31	chr3:141131800-141135600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:141131800-141136200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:141131800-141136200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr3:141131800-141136200	Genic enhancers	Lung	lung
35	chr3:141131800-141144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:141131800-141161200	Weak transcription	Thymus	Thymus
37	chr3:141132000-141132600	Genic enhancers	Fetal Lung	lung
38	chr3:141132000-141132600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
39	chr3:141132000-141132600	Genic enhancers	A549	lung
40	chr3:141132000-141132800	Enhancers	Primary T cells fromperipheralblood	blood
41	chr3:141132000-141132800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr3:141132000-141132800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
43	chr3:141132000-141132800	Weak transcription	Fetal Brain Female	brain
44	chr3:141132000-141132800	Genic enhancers	HSMMtube	muscle
45	chr3:141132000-141133000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr3:141132000-141133000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr3:141132000-141133600	Genic enhancers	Fetal Muscle Leg	muscle
48	chr3:141132000-141133800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:141132000-141134600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr3:141132000-141137400	Genic enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links