Variant report

Variant	rs73869601
Chromosome Location	chr3:141080008-141080009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:141079682..141080290-chr3:141170633..141171265,2	K562	blood:
2	chr3:141058868..141063187-chr3:141079232..141081796,3	K562	blood:
3	chr3:141079302..141080674-chr3:141170565..141171750,10	MCF-7	breast:
4	chr3:141078586..141083082-chr3:141083147..141089245,7	K562	blood:
5	chr3:141078561..141083432-chr3:141083715..141088682,12	MCF-7	breast:
6	chr3:141079407..141080028-chr3:141170532..141171147,3	MCF-7	breast:
7	chr3:141078321..141083296-chr3:141083518..141088899,11	MCF-7	breast:
8	chr3:141079528..141080322-chr3:141183757..141184563,2	MCF-7	breast:
9	chr3:141079925..141082450-chr3:141119569..141122441,3	MCF-7	breast:
10	chr3:141069302..141073893-chr3:141077867..141081931,7	K562	blood:
11	chr3:141075490..141079205-chr3:141079286..141082614,3	K562	blood:
12	chr3:141050875..141052406-chr3:141079993..141082555,2	MCF-7	breast:
13	chr17:57921417..57923726-chr3:141079950..141082579,2	MCF-7	breast:
14	chr3:141030620..141031322-chr3:141079536..141080193,2	MCF-7	breast:
15	chr3:141079769..141080419-chr3:141159982..141160828,3	K562	blood:
16	chr3:141079580..141080372-chr3:141159972..141160950,4	MCF-7	breast:
17	chr3:141079477..141080357-chr3:141173225..141175092,7	MCF-7	breast:
18	chr3:141079608..141080516-chr3:141157115..141158012,2	MCF-7	breast:
19	chr3:141078564..141081479-chr3:141173622..141176571,3	MCF-7	breast:
20	chr3:141078683..141080733-chr3:141115929..141118678,2	MCF-7	breast:
21	chr3:141079392..141080078-chr3:141178700..141179365,3	K562	blood:
22	chr3:141074101..141082527-chr3:141083011..141090165,19	K562	blood:
23	chr3:141078410..141082494-chr3:141170544..141172496,3	MCF-7	breast:
24	chr3:141030361..141031248-chr3:141079401..141080364,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000177311	Chromatin interaction
ENSG00000249417	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16851365	1.00[AMR][1000 genomes]
rs16851408	0.87[AMR][1000 genomes]
rs55755373	1.00[AMR][1000 genomes]
rs59655257	1.00[AMR][1000 genomes]
rs59876827	1.00[AMR][1000 genomes]
rs6790603	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73869587	1.00[AMR][1000 genomes]
rs73872722	0.87[AMR][1000 genomes]
rs7625729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
2	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:141077600-141085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:141079000-141080400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:141079000-141080800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:141079200-141080400	Enhancers	Fetal Intestine Large	intestine
7	chr3:141079400-141080400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:141079400-141080800	Enhancers	HepG2	liver
9	chr3:141079400-141081400	Enhancers	NHLF	lung
10	chr3:141079600-141080200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:141079600-141080200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:141079600-141080200	Enhancers	Primary B cells from peripheral blood	blood
13	chr3:141079600-141080200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:141079600-141080200	Active TSS	Brain Anterior Caudate	brain
15	chr3:141079600-141080200	Enhancers	Fetal Thymus	thymus
16	chr3:141079600-141080200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr3:141079600-141080400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:141079600-141080400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr3:141079600-141080400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:141079600-141080400	Enhancers	Fetal Heart	heart
21	chr3:141079600-141080400	Enhancers	Pancreas	Pancrea
22	chr3:141079600-141080400	Flanking Active TSS	Hela-S3	cervix
23	chr3:141079600-141080600	Enhancers	Aorta	Aorta
24	chr3:141079600-141080600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr3:141079600-141080600	Enhancers	Placenta	Placenta
26	chr3:141079600-141080600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:141079600-141080600	Enhancers	Small Intestine	intestine
28	chr3:141079600-141080600	Enhancers	Stomach Mucosa	stomach
29	chr3:141079600-141080600	Flanking Active TSS	A549	lung
30	chr3:141079600-141080800	Enhancers	Fetal Intestine Small	intestine
31	chr3:141079600-141080800	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr3:141079600-141080800	Enhancers	HMEC	breast
33	chr3:141079600-141081000	Flanking Active TSS	GM12878-XiMat	blood
34	chr3:141079800-141080200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr3:141079800-141080200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr3:141079800-141080200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr3:141079800-141080200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr3:141079800-141080200	Active TSS	Adipose Nuclei	Adipose
39	chr3:141079800-141080200	Flanking Active TSS	Liver	Liver
40	chr3:141079800-141080200	Flanking Active TSS	Brain Hippocampus Middle	brain
41	chr3:141079800-141080200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr3:141079800-141080200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr3:141079800-141080200	Active TSS	Fetal Lung	lung
44	chr3:141079800-141080200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr3:141079800-141080200	Active TSS	Right Atrium	heart
46	chr3:141079800-141080200	Flanking Active TSS	HSMM	muscle
47	chr3:141079800-141080200	Flanking Active TSS	K562	blood
48	chr3:141079800-141080200	Active TSS	NHDF-Ad	bronchial
49	chr3:141079800-141080400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:141079800-141080400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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