Variant report

Variant	rs59667261
Chromosome Location	chr9:110393546-110393547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110248310..110253856-chr9:110387888..110398318,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58546718	0.95[ASN][1000 genomes]
rs61410266	0.95[ASN][1000 genomes]
rs884699	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110387000-110399600	Weak transcription	Colonic Mucosa	Colon
2	chr9:110390200-110394000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:110390400-110394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:110390400-110399600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr9:110390400-110400000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:110390800-110394200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:110391200-110393600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:110391200-110393800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:110391200-110394200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:110391200-110396000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:110391400-110393800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:110391400-110393800	Weak transcription	Fetal Intestine Small	intestine
13	chr9:110391800-110393600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:110391800-110395600	Weak transcription	Stomach Mucosa	stomach
15	chr9:110391800-110399600	Weak transcription	Pancreas	Pancrea
16	chr9:110392600-110399200	Weak transcription	Spleen	Spleen
17	chr9:110393200-110394600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:110393200-110397800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr9:110393400-110394800	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:110393400-110396400	Enhancers	Fetal Muscle Leg	muscle
21	chr9:110393400-110397800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr9:110393400-110397800	Weak transcription	Monocytes-CD14+_RO01746	blood

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