Variant report

Variant	rs884699
Chromosome Location	chr9:110394160-110394161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110394129..110396586-chr9:110398841..110400820,2	MCF-7	breast:
2	chr9:110248310..110253856-chr9:110387888..110398318,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58546718	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59667261	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61410266	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110387000-110399600	Weak transcription	Colonic Mucosa	Colon
2	chr9:110390400-110394200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:110390400-110399600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:110390400-110400000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:110390800-110394200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:110391200-110394200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:110391200-110396000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr9:110391800-110395600	Weak transcription	Stomach Mucosa	stomach
9	chr9:110391800-110399600	Weak transcription	Pancreas	Pancrea
10	chr9:110392600-110399200	Weak transcription	Spleen	Spleen
11	chr9:110393200-110394600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:110393200-110397800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr9:110393400-110394800	Enhancers	Fetal Muscle Trunk	muscle
14	chr9:110393400-110396400	Enhancers	Fetal Muscle Leg	muscle
15	chr9:110393400-110397800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr9:110393400-110397800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:110393600-110394200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:110393600-110394600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr9:110393600-110394800	Enhancers	Brain Germinal Matrix	brain
20	chr9:110393600-110396200	Enhancers	H9 Cell Line	embryonic stem cell
21	chr9:110393600-110396200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr9:110393600-110396200	Enhancers	Fetal Lung	lung
23	chr9:110393600-110396400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:110393600-110396400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:110393600-110396400	Enhancers	Fetal Stomach	stomach
26	chr9:110393600-110399200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:110393800-110395600	Enhancers	Fetal Brain Female	brain
28	chr9:110393800-110396200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr9:110393800-110396200	Enhancers	Fetal Kidney	kidney
30	chr9:110393800-110396400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:110393800-110396600	Enhancers	Fetal Intestine Small	intestine
32	chr9:110394000-110394200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:110394000-110394400	Enhancers	Brain Anterior Caudate	brain
34	chr9:110394000-110394400	Enhancers	Brain Cingulate Gyrus	brain
35	chr9:110394000-110394400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr9:110394000-110394800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr9:110394000-110394800	Enhancers	Adipose Nuclei	Adipose
38	chr9:110394000-110394800	Enhancers	Ovary	ovary
39	chr9:110394000-110394800	Enhancers	Right Atrium	heart
40	chr9:110394000-110395400	Weak transcription	Fetal Intestine Large	intestine
41	chr9:110394000-110395800	Enhancers	NHDF-Ad	bronchial
42	chr9:110394000-110396200	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr9:110394000-110396200	Enhancers	H1 Cell Line	embryonic stem cell

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