Variant report

Variant	rs59680035
Chromosome Location	chr19:37849110-37849111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37838063..37840096-chr19:37846657..37849398,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181666	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55696165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55880052	0.87[AFR][1000 genomes]
rs57082213	1.00[AMR][1000 genomes]
rs60177574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930974	1.00[AMR][1000 genomes]
rs73930978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930979	1.00[AFR][1000 genomes]
rs73930982	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv9718	chr19:37839070-37852872	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826200-37853200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37826600-37856200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr19:37826800-37852600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:37826800-37853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:37827000-37853400	Weak transcription	Stomach Mucosa	stomach
7	chr19:37828000-37855800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:37830000-37853600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr19:37830800-37853200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr19:37832600-37852200	Weak transcription	Fetal Thymus	thymus
11	chr19:37832800-37850800	Weak transcription	HMEC	breast
12	chr19:37832800-37852400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:37836800-37852000	Weak transcription	Aorta	Aorta
14	chr19:37837800-37852200	Weak transcription	Right Ventricle	heart
15	chr19:37839000-37850000	Weak transcription	Spleen	Spleen
16	chr19:37839000-37850400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:37839000-37852800	Weak transcription	Brain Substantia Nigra	brain
18	chr19:37839200-37850200	Weak transcription	HepG2	liver
19	chr19:37839200-37851400	Weak transcription	HUVEC	blood vessel
20	chr19:37839600-37853200	Weak transcription	Hela-S3	cervix
21	chr19:37839800-37853600	Weak transcription	Fetal Heart	heart
22	chr19:37840200-37852000	Weak transcription	Esophagus	oesophagus
23	chr19:37840200-37852000	Weak transcription	NHEK	skin
24	chr19:37840200-37852200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr19:37840400-37850000	Weak transcription	HSMMtube	muscle
26	chr19:37840400-37850600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr19:37840400-37853200	Weak transcription	NH-A	brain
28	chr19:37840600-37852400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr19:37840800-37852400	Weak transcription	Brain Angular Gyrus	brain
30	chr19:37840800-37853200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr19:37841000-37852000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr19:37841200-37851600	Weak transcription	Left Ventricle	heart
33	chr19:37841200-37855200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:37842000-37850200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr19:37842400-37849600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr19:37842600-37850800	Weak transcription	HSMM	muscle
37	chr19:37842600-37855400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr19:37842800-37856600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:37843200-37849600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:37843800-37855800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:37843800-37857600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
42	chr19:37844000-37857000	ZNF genes & repeats	Liver	Liver
43	chr19:37844200-37849600	Weak transcription	Lung	lung
44	chr19:37844200-37852000	Weak transcription	Pancreas	Pancrea
45	chr19:37845400-37855800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
46	chr19:37845600-37849600	ZNF genes & repeats	Primary B cells from cord blood	blood
47	chr19:37845600-37853200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr19:37845600-37853600	Strong transcription	Fetal Muscle Trunk	muscle
49	chr19:37845600-37855800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr19:37845800-37850000	Weak transcription	Gastric	stomach

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