Variant report

Variant	rs60177574
Chromosome Location	chr19:37857504-37857505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37855409..37858293-chr19:37876540..37879521,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55696165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55880052	0.87[AFR][1000 genomes]
rs57082213	1.00[AMR][1000 genomes]
rs59680035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930974	1.00[AMR][1000 genomes]
rs73930978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73930979	1.00[AFR][1000 genomes]
rs73930982	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:37843800-37857600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37854200-37861200	Weak transcription	Psoas Muscle	Psoas
4	chr19:37854200-37861400	Weak transcription	Small Intestine	intestine
5	chr19:37855000-37861400	Weak transcription	Fetal Heart	heart
6	chr19:37855000-37861600	Weak transcription	Aorta	Aorta
7	chr19:37855200-37860800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr19:37855200-37861000	Weak transcription	Right Ventricle	heart
9	chr19:37855200-37861200	Weak transcription	Left Ventricle	heart
10	chr19:37855200-37861400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr19:37855200-37861400	Weak transcription	Fetal Brain Male	brain
12	chr19:37855200-37861400	Weak transcription	NH-A	brain
13	chr19:37855400-37860400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr19:37855400-37860800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:37855400-37860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr19:37855400-37861000	Weak transcription	Fetal Kidney	kidney
17	chr19:37855400-37861400	Weak transcription	Hela-S3	cervix
18	chr19:37855600-37860600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr19:37855600-37860800	Weak transcription	Brain Angular Gyrus	brain
20	chr19:37855600-37861200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr19:37855600-37861200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr19:37855600-37861400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr19:37855600-37861400	Weak transcription	Ovary	ovary
24	chr19:37855600-37861400	Weak transcription	HSMMtube	muscle
25	chr19:37855600-37861400	Weak transcription	Osteobl	bone
26	chr19:37855800-37860800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr19:37855800-37861200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr19:37855800-37861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:37855800-37861400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:37856400-37861400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr19:37856400-37861400	Weak transcription	Brain Hippocampus Middle	brain
32	chr19:37856600-37860800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:37856600-37860800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr19:37856800-37861200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr19:37856800-37861200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr19:37856800-37861200	Weak transcription	Fetal Lung	lung
37	chr19:37857000-37860400	Weak transcription	Dnd41	blood
38	chr19:37857000-37860800	Weak transcription	Adipose Nuclei	Adipose
39	chr19:37857000-37861200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr19:37857000-37861400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr19:37857200-37861200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr19:37857400-37860800	Weak transcription	NHDF-Ad	bronchial

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