Variant report

Variant	rs59689523
Chromosome Location	chr6:54826089-54826090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82172186..82173887-chr6:54825044..54826564,2	MCF-7	breast:
2	chr16:82172809..82174478-chr6:54825066..54826566,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261235	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1028423	0.84[ASN][1000 genomes]
rs1056630	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs13216252	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1503150	0.92[ASN][1000 genomes]
rs171226	0.84[ASN][1000 genomes]
rs1738459	0.92[ASN][1000 genomes]
rs183011	0.84[ASN][1000 genomes]
rs2397176	0.84[ASN][1000 genomes]
rs239780	0.84[ASN][1000 genomes]
rs239787	0.92[ASN][1000 genomes]
rs239788	0.92[ASN][1000 genomes]
rs239789	0.92[ASN][1000 genomes]
rs239791	0.92[ASN][1000 genomes]
rs239793	0.92[ASN][1000 genomes]
rs239797	0.92[ASN][1000 genomes]
rs239798	0.92[ASN][1000 genomes]
rs239799	0.92[ASN][1000 genomes]
rs239802	0.92[ASN][1000 genomes]
rs239807	0.92[ASN][1000 genomes]
rs239808	0.92[ASN][1000 genomes]
rs239810	0.92[ASN][1000 genomes]
rs239823	0.84[ASN][1000 genomes]
rs239824	0.84[ASN][1000 genomes]
rs239827	0.84[ASN][1000 genomes]
rs239829	0.84[ASN][1000 genomes]
rs239830	0.84[ASN][1000 genomes]
rs239831	0.84[ASN][1000 genomes]
rs239832	0.84[ASN][1000 genomes]
rs239833	0.84[ASN][1000 genomes]
rs239834	0.84[ASN][1000 genomes]
rs239835	0.84[ASN][1000 genomes]
rs239836	0.84[ASN][1000 genomes]
rs239838	0.84[ASN][1000 genomes]
rs239839	0.84[ASN][1000 genomes]
rs239840	0.84[ASN][1000 genomes]
rs239841	0.84[ASN][1000 genomes]
rs239842	0.84[ASN][1000 genomes]
rs239843	0.84[ASN][1000 genomes]
rs239844	0.84[ASN][1000 genomes]
rs239845	0.84[ASN][1000 genomes]
rs239846	0.84[ASN][1000 genomes]
rs239847	0.84[ASN][1000 genomes]
rs239848	0.84[ASN][1000 genomes]
rs239849	0.84[ASN][1000 genomes]
rs2746440	0.92[ASN][1000 genomes]
rs35620314	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs378853	0.92[ASN][1000 genomes]
rs398483	0.92[ASN][1000 genomes]
rs406149	0.84[ASN][1000 genomes]
rs57835829	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6917766	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73431470	0.84[ASN][1000 genomes]
rs7453441	0.85[EUR][1000 genomes]
rs7749972	0.92[ASN][1000 genomes]
rs9475077	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54825800-54826200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:54826000-54826400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:54826000-54826600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:54826000-54827000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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