The 2.0 version of rSNPBase

Variant report

Variant rs59693338
Chromosome Location chr2:30473177-30473178
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:30457000-30476600 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr2:30457800-30481000 Weak transcription Gastric stomach
3 chr2:30458400-30475800 Weak transcription Fetal Kidney kidney
4 chr2:30461000-30479800 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr2:30462200-30473200 Weak transcription H1 Cell Line embryonic stem cell
6 chr2:30462800-30474800 Weak transcription Muscle Satellite Cultured Cells --
7 chr2:30462800-30475400 Genic enhancers Primary T regulatory cells fromperipheralblood blood
8 chr2:30463000-30474200 Weak transcription Fetal Intestine Large intestine
9 chr2:30463000-30474800 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr2:30463000-30475400 Genic enhancers Primary T cells fromperipheralblood blood
11 chr2:30463400-30473400 Weak transcription Ovary ovary
12 chr2:30463400-30474800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
13 chr2:30463400-30474800 Weak transcription Duodenum Mucosa Duodenum
14 chr2:30463400-30475000 Weak transcription Rectal Mucosa Donor 29 rectum
15 chr2:30463400-30475400 Weak transcription Fetal Muscle Trunk muscle
16 chr2:30463400-30475600 Weak transcription Brain Germinal Matrix brain
17 chr2:30463400-30475600 Weak transcription Colon Smooth Muscle Colon
18 chr2:30463400-30475600 Weak transcription Esophagus oesophagus
19 chr2:30463600-30473200 Weak transcription Skeletal Muscle Female skeletal muscle
20 chr2:30463600-30475600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
21 chr2:30463600-30475600 Weak transcription Osteobl bone
22 chr2:30463800-30474800 Weak transcription Duodenum Smooth Muscle Duodenum
23 chr2:30464200-30474600 Weak transcription Small Intestine intestine
24 chr2:30465400-30474000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr2:30465400-30480000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr2:30466000-30477000 Genic enhancers Primary B cells from peripheral blood blood
27 chr2:30466200-30474000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
28 chr2:30466200-30476400 Genic enhancers Primary T helper cells PMA-I stimulated --
29 chr2:30466200-30480400 Weak transcription Fetal Brain Male brain
30 chr2:30466600-30474600 Weak transcription NH-A brain
31 chr2:30467200-30475600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr2:30467400-30475600 Enhancers Primary T killer memory cells from peripheral blood blood
33 chr2:30467600-30479600 Weak transcription Fetal Brain Female brain
34 chr2:30468000-30475400 Genic enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr2:30468600-30475600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
36 chr2:30469000-30473200 Weak transcription Dnd41 blood
37 chr2:30469800-30475000 Genic enhancers Breast Myoepithelial Primary Cells Breast
38 chr2:30470200-30474400 Genic enhancers NHLF lung
39 chr2:30470400-30473200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
40 chr2:30470400-30474800 Enhancers K562 blood
41 chr2:30470400-30478000 Enhancers Left Ventricle heart
42 chr2:30470400-30479600 Genic enhancers Fetal Thymus thymus
43 chr2:30470600-30475000 Genic enhancers A549 lung
44 chr2:30470800-30475200 Genic enhancers Thymus Thymus
45 chr2:30471000-30484400 Weak transcription Pancreatic Islets Pancreatic Islet
46 chr2:30471200-30479600 Enhancers Primary T killer naive cells fromperipheralblood blood
47 chr2:30471200-30482000 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
48 chr2:30471400-30479400 Enhancers Placenta Placenta
49 chr2:30471600-30474000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
50 chr2:30471600-30474800 Weak transcription Sigmoid Colon Sigmoid Colon

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015