Variant report

Variant	rs59697450
Chromosome Location	chr13:51892199-51892200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51883357..51884920-chr13:51891392..51893202,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1570549	0.80[AFR][1000 genomes]
rs1570550	0.80[AFR][1000 genomes]
rs4942993	0.80[AFR][1000 genomes]
rs59215783	0.80[AFR][1000 genomes]
rs60860538	0.80[AFR][1000 genomes]
rs61956888	0.80[AFR][1000 genomes]
rs61956889	0.80[AFR][1000 genomes]
rs8001625	0.80[AFR][1000 genomes]
rs9568564	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51888800-51892400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:51889000-51892200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:51889000-51892600	Enhancers	Osteobl	bone
5	chr13:51889000-51892800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:51889200-51892400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:51889200-51892600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr13:51889200-51892600	Enhancers	NH-A	brain
9	chr13:51889200-51892600	Enhancers	NHDF-Ad	bronchial
10	chr13:51889400-51901200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr13:51889800-51896200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:51890000-51893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:51890000-51893800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:51890000-51897200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:51890000-51899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr13:51890000-51904800	Weak transcription	Right Atrium	heart
17	chr13:51890200-51893200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:51890200-51895400	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:51890200-51896200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51890200-51897400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr13:51890200-51899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:51890400-51895600	Weak transcription	Brain Anterior Caudate	brain
23	chr13:51890400-51896200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr13:51890600-51898400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51891000-51892800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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