Variant report

Variant	rs60860538
Chromosome Location	chr13:51897259-51897260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11148215	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11148216	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11148217	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11148219	0.85[EUR][1000 genomes]
rs11838784	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839165	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842573	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11842878	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843638	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11843641	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100084	0.85[EUR][1000 genomes]
rs12100112	0.85[EUR][1000 genomes]
rs12584325	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12584416	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12585171	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585343	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586110	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413103	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194921	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194928	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194935	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194955	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17194985	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17195027	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17529985	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790799	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790811	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790838	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4941699	0.85[EUR][1000 genomes]
rs4942992	1.00[ASN][1000 genomes]
rs4942993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942994	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4942995	0.85[EUR][1000 genomes]
rs4942996	0.85[EUR][1000 genomes]
rs4942997	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942998	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942999	0.85[EUR][1000 genomes]
rs59024783	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59215783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59697450	0.80[AFR][1000 genomes]
rs61956888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956909	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956910	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956911	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956912	0.92[EUR][1000 genomes]
rs61956913	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956914	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956916	0.92[EUR][1000 genomes]
rs61956917	0.85[EUR][1000 genomes]
rs61956937	0.85[EUR][1000 genomes]
rs61956938	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956942	0.85[EUR][1000 genomes]
rs61956943	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956944	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956947	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956949	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956950	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956951	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956952	0.85[EUR][1000 genomes]
rs61956955	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61958268	0.86[ASN][1000 genomes]
rs73195977	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73195982	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73195996	0.85[EUR][1000 genomes]
rs73197808	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7400061	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7988157	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990114	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992891	0.85[EUR][1000 genomes]
rs7995268	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8001625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316535	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9526756	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9563041	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563042	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563043	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563044	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563045	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563047	0.85[EUR][1000 genomes]
rs9563049	0.85[EUR][1000 genomes]
rs9563050	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563052	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563053	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563054	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563055	0.85[EUR][1000 genomes]
rs9563056	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568566	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568567	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568568	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568570	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568571	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568572	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568573	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568574	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568575	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568576	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568578	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568579	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568580	0.81[EUR][1000 genomes]
rs9568581	0.92[EUR][1000 genomes]
rs9568585	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568586	0.85[EUR][1000 genomes]
rs9568588	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568589	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568590	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568591	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568592	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568593	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568594	0.85[EUR][1000 genomes]
rs9568596	0.85[EUR][1000 genomes]
rs9568609	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634685	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634838	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634839	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634840	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634844	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51889400-51901200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:51890000-51899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:51890000-51904800	Weak transcription	Right Atrium	heart
5	chr13:51890200-51897400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:51890200-51899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:51890600-51898400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:51892200-51897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:51893800-51898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:51894000-51898800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr13:51895600-51898400	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:51895600-51898600	Enhancers	Brain Anterior Caudate	brain
13	chr13:51895800-51897400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr13:51896200-51898400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr13:51896200-51898600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr13:51896400-51898400	Weak transcription	Brain Germinal Matrix	brain
17	chr13:51896600-51899400	Enhancers	Brain Hippocampus Middle	brain
18	chr13:51897000-51898800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:51897000-51900400	Enhancers	Brain Substantia Nigra	brain
20	chr13:51897200-51897400	Enhancers	H9 Cell Line	embryonic stem cell
21	chr13:51897200-51897400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:51897200-51897400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr13:51897200-51897600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:51897200-51897600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:51897200-51897800	Enhancers	Fetal Muscle Trunk	muscle
26	chr13:51897200-51899200	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links