Variant report

Variant	rs9563049
Chromosome Location	chr13:51952052-51952053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs11148215	0.93[EUR][1000 genomes]
rs11148216	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148217	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838784	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11839165	0.93[EUR][1000 genomes]
rs11842573	0.93[EUR][1000 genomes]
rs11842878	0.93[EUR][1000 genomes]
rs11843638	0.93[EUR][1000 genomes]
rs11843641	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12100084	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100112	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12184757	1.00[CEU][hapmap]
rs12584325	0.93[EUR][1000 genomes]
rs12584416	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12585171	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12585343	0.93[EUR][1000 genomes]
rs12586110	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1413103	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1547710	0.82[JPT][hapmap]
rs1570549	0.85[EUR][1000 genomes]
rs1570550	0.85[EUR][1000 genomes]
rs17194921	0.93[EUR][1000 genomes]
rs17194928	0.93[EUR][1000 genomes]
rs17194935	0.93[EUR][1000 genomes]
rs17194955	0.93[EUR][1000 genomes]
rs17194985	0.93[EUR][1000 genomes]
rs17195027	0.93[EUR][1000 genomes]
rs17252180	0.82[JPT][hapmap]
rs17252193	0.82[JPT][hapmap]
rs17252200	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs17529985	0.86[EUR][1000 genomes]
rs17790799	0.93[EUR][1000 genomes]
rs17790811	0.93[EUR][1000 genomes]
rs17790838	0.93[EUR][1000 genomes]
rs17837214	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs17837215	0.82[JPT][hapmap]
rs17837216	0.82[JPT][hapmap]
rs17837217	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs4941699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942993	0.89[EUR][1000 genomes]
rs4942994	0.89[EUR][1000 genomes]
rs4942995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942997	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4942998	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4942999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59024783	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59215783	0.85[EUR][1000 genomes]
rs60860538	0.85[EUR][1000 genomes]
rs61956888	0.85[EUR][1000 genomes]
rs61956889	0.85[EUR][1000 genomes]
rs61956909	0.93[EUR][1000 genomes]
rs61956910	0.93[EUR][1000 genomes]
rs61956911	0.86[EUR][1000 genomes]
rs61956912	0.93[EUR][1000 genomes]
rs61956913	0.93[EUR][1000 genomes]
rs61956914	0.93[EUR][1000 genomes]
rs61956915	0.93[EUR][1000 genomes]
rs61956916	0.93[EUR][1000 genomes]
rs61956917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956938	0.93[EUR][1000 genomes]
rs61956942	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956943	0.93[EUR][1000 genomes]
rs61956944	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61956945	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61956947	0.93[EUR][1000 genomes]
rs61956949	0.93[EUR][1000 genomes]
rs61956950	0.93[EUR][1000 genomes]
rs61956951	0.93[EUR][1000 genomes]
rs61956952	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956955	0.93[EUR][1000 genomes]
rs73195977	0.93[EUR][1000 genomes]
rs73195982	0.93[EUR][1000 genomes]
rs73195996	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197808	0.93[EUR][1000 genomes]
rs7333988	0.85[JPT][hapmap];0.82[EUR][1000 genomes]
rs7400061	0.93[EUR][1000 genomes]
rs7988157	0.89[EUR][1000 genomes]
rs7990114	0.93[EUR][1000 genomes]
rs7992891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8001625	0.85[EUR][1000 genomes]
rs9316535	0.93[EUR][1000 genomes]
rs9316537	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563041	0.93[EUR][1000 genomes]
rs9563042	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9563043	0.93[EUR][1000 genomes]
rs9563044	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs9563045	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9563047	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9563050	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563052	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563053	0.93[EUR][1000 genomes]
rs9563054	0.93[EUR][1000 genomes]
rs9563055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563056	0.86[EUR][1000 genomes]
rs9568564	0.85[EUR][1000 genomes]
rs9568565	0.85[EUR][1000 genomes]
rs9568566	0.93[EUR][1000 genomes]
rs9568567	0.93[EUR][1000 genomes]
rs9568568	0.93[EUR][1000 genomes]
rs9568569	0.93[EUR][1000 genomes]
rs9568570	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568571	0.93[EUR][1000 genomes]
rs9568572	0.93[EUR][1000 genomes]
rs9568573	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568574	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568575	0.89[EUR][1000 genomes]
rs9568576	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568578	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9568579	0.93[EUR][1000 genomes]
rs9568580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568581	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9568585	0.93[EUR][1000 genomes]
rs9568586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568588	0.93[EUR][1000 genomes]
rs9568589	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568590	0.93[EUR][1000 genomes]
rs9568591	0.93[EUR][1000 genomes]
rs9568592	0.93[EUR][1000 genomes]
rs9568593	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568596	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568609	0.86[EUR][1000 genomes]
rs9634684	1.00[CEU][hapmap]
rs9634685	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9634838	0.93[EUR][1000 genomes]
rs9634839	0.93[EUR][1000 genomes]
rs9634840	0.93[EUR][1000 genomes]
rs9634844	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9563049	Hs.123474	cis	multi-tissue	Pritchard

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
2	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
6	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
7	chr13:51935600-51954000	Weak transcription	Stomach Mucosa	stomach
8	chr13:51935600-51971400	Weak transcription	Gastric	stomach
9	chr13:51935800-51954800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr13:51935800-51962000	Strong transcription	Dnd41	blood
11	chr13:51936200-51963600	Strong transcription	Liver	Liver
12	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
13	chr13:51937400-51953200	Strong transcription	Fetal Intestine Large	intestine
14	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:51937600-51954400	Weak transcription	Fetal Heart	heart
16	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr13:51938400-51959200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr13:51938400-51959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:51938600-51952200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:51938600-51959400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:51938600-51960400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr13:51938600-51961800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr13:51938800-51954400	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr13:51939200-51954400	Strong transcription	HMEC	breast
25	chr13:51939200-51954600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr13:51939200-51970600	Weak transcription	Brain Angular Gyrus	brain
27	chr13:51939400-51962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr13:51940200-51954600	Strong transcription	Primary hematopoietic stem cells	blood
29	chr13:51940400-51958000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr13:51940400-51959200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:51940600-51952600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr13:51941200-51954000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:51941200-51958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:51941600-51952600	Strong transcription	HepG2	liver
35	chr13:51941800-51958000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr13:51942000-51954600	Strong transcription	Primary B cells from cord blood	blood
37	chr13:51942200-51952600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:51944600-51952600	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:51944600-51953200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr13:51944800-51959600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr13:51944800-51964200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:51945000-51952800	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr13:51945000-51954400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:51945000-51960400	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr13:51945000-51964400	Strong transcription	HSMM	muscle
46	chr13:51945200-51970600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:51945400-51954000	Strong transcription	HUVEC	blood vessel
49	chr13:51945400-51970600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr13:51945600-51952600	Strong transcription	Duodenum Smooth Muscle	Duodenum

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