Variant report

Variant	rs9568609
Chromosome Location	chr13:52055406-52055407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 124 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs11148215	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148219	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11838784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11839165	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11842573	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842878	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843638	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100084	0.86[EUR][1000 genomes]
rs12100112	0.86[EUR][1000 genomes]
rs12184757	1.00[CEU][hapmap]
rs12584325	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12585343	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413103	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570549	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570550	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194921	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194928	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194935	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194955	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194985	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195027	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790799	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790811	1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790838	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941699	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4942992	0.86[ASN][1000 genomes]
rs4942993	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942994	0.89[EUR][1000 genomes]
rs4942995	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4942996	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4942997	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942999	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs59024783	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59215783	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60860538	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956888	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956889	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956909	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956910	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956911	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956912	0.93[EUR][1000 genomes]
rs61956913	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956914	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956915	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956916	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61956917	0.86[EUR][1000 genomes]
rs61956937	0.86[EUR][1000 genomes]
rs61956938	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956942	0.86[EUR][1000 genomes]
rs61956943	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956944	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956947	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956949	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956950	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956951	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956952	0.86[EUR][1000 genomes]
rs61956955	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958268	1.00[ASN][1000 genomes]
rs73195977	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195982	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195996	0.86[EUR][1000 genomes]
rs73197808	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7400061	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988157	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990114	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7992891	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7995268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001625	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316535	0.93[EUR][1000 genomes]
rs9526756	1.00[ASN][1000 genomes]
rs9563041	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563043	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563044	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563047	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9563049	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9563050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563052	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563053	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563054	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563055	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9563056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568564	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568565	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568566	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568567	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568568	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568569	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568571	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568572	1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs9568573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568579	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568585	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568586	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9568588	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568590	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568591	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568592	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568594	0.86[EUR][1000 genomes]
rs9568596	0.86[EUR][1000 genomes]
rs9568610	0.91[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9634684	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9634685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634838	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634839	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634840	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634844	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52053800-52056400	Weak transcription	Osteobl	bone

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