Variant report

Variant	rs73195996
Chromosome Location	chr13:51943462-51943463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11148215	0.93[EUR][1000 genomes]
rs11148216	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148217	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148219	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838784	0.93[EUR][1000 genomes]
rs11839165	0.93[EUR][1000 genomes]
rs11842573	0.93[EUR][1000 genomes]
rs11842878	0.93[EUR][1000 genomes]
rs11843638	0.93[EUR][1000 genomes]
rs11843641	0.93[EUR][1000 genomes]
rs12100084	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100112	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584325	0.93[EUR][1000 genomes]
rs12584416	0.93[EUR][1000 genomes]
rs12585171	0.93[EUR][1000 genomes]
rs12585343	0.93[EUR][1000 genomes]
rs12586110	0.93[EUR][1000 genomes]
rs1413103	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1570549	0.85[EUR][1000 genomes]
rs1570550	0.85[EUR][1000 genomes]
rs17194921	0.93[EUR][1000 genomes]
rs17194928	0.93[EUR][1000 genomes]
rs17194935	0.93[EUR][1000 genomes]
rs17194955	0.93[EUR][1000 genomes]
rs17194985	0.93[EUR][1000 genomes]
rs17195027	0.93[EUR][1000 genomes]
rs17529985	0.86[EUR][1000 genomes]
rs17790799	0.93[EUR][1000 genomes]
rs17790811	0.93[EUR][1000 genomes]
rs17790838	0.93[EUR][1000 genomes]
rs4941699	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942993	0.89[EUR][1000 genomes]
rs4942994	0.89[EUR][1000 genomes]
rs4942995	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942996	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942997	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4942998	0.93[EUR][1000 genomes]
rs4942999	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59024783	0.93[EUR][1000 genomes]
rs59215783	0.85[EUR][1000 genomes]
rs60860538	0.85[EUR][1000 genomes]
rs61956888	0.85[EUR][1000 genomes]
rs61956889	0.85[EUR][1000 genomes]
rs61956909	0.93[EUR][1000 genomes]
rs61956910	0.93[EUR][1000 genomes]
rs61956911	0.86[EUR][1000 genomes]
rs61956912	0.93[EUR][1000 genomes]
rs61956913	0.93[EUR][1000 genomes]
rs61956914	0.93[EUR][1000 genomes]
rs61956915	0.93[EUR][1000 genomes]
rs61956916	0.93[EUR][1000 genomes]
rs61956917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956938	0.93[EUR][1000 genomes]
rs61956942	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956943	0.93[EUR][1000 genomes]
rs61956944	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61956945	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61956947	0.93[EUR][1000 genomes]
rs61956949	0.93[EUR][1000 genomes]
rs61956950	0.93[EUR][1000 genomes]
rs61956951	0.93[EUR][1000 genomes]
rs61956952	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956955	0.93[EUR][1000 genomes]
rs73195977	0.93[EUR][1000 genomes]
rs73195982	0.93[EUR][1000 genomes]
rs73197808	0.93[EUR][1000 genomes]
rs7333988	0.82[EUR][1000 genomes]
rs7400061	0.93[EUR][1000 genomes]
rs7988157	0.89[EUR][1000 genomes]
rs7990114	0.93[EUR][1000 genomes]
rs7992891	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995268	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8001625	0.85[EUR][1000 genomes]
rs9316535	0.93[EUR][1000 genomes]
rs9316537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563041	0.93[EUR][1000 genomes]
rs9563042	0.93[EUR][1000 genomes]
rs9563043	0.93[EUR][1000 genomes]
rs9563044	0.93[EUR][1000 genomes]
rs9563045	0.93[EUR][1000 genomes]
rs9563047	0.86[EUR][1000 genomes]
rs9563049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563050	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563052	0.93[EUR][1000 genomes]
rs9563053	0.93[EUR][1000 genomes]
rs9563054	0.93[EUR][1000 genomes]
rs9563055	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563056	0.86[EUR][1000 genomes]
rs9568564	0.85[EUR][1000 genomes]
rs9568565	0.85[EUR][1000 genomes]
rs9568566	0.93[EUR][1000 genomes]
rs9568567	0.93[EUR][1000 genomes]
rs9568568	0.93[EUR][1000 genomes]
rs9568569	0.93[EUR][1000 genomes]
rs9568570	0.93[EUR][1000 genomes]
rs9568571	0.93[EUR][1000 genomes]
rs9568572	0.93[EUR][1000 genomes]
rs9568573	0.93[EUR][1000 genomes]
rs9568574	0.93[EUR][1000 genomes]
rs9568575	0.89[EUR][1000 genomes]
rs9568576	0.93[EUR][1000 genomes]
rs9568578	0.86[EUR][1000 genomes]
rs9568579	0.93[EUR][1000 genomes]
rs9568580	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568581	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9568585	0.93[EUR][1000 genomes]
rs9568586	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568588	0.93[EUR][1000 genomes]
rs9568589	0.93[EUR][1000 genomes]
rs9568590	0.93[EUR][1000 genomes]
rs9568591	0.93[EUR][1000 genomes]
rs9568592	0.93[EUR][1000 genomes]
rs9568593	0.93[EUR][1000 genomes]
rs9568594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568596	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568609	0.86[EUR][1000 genomes]
rs9634685	0.93[EUR][1000 genomes]
rs9634838	0.93[EUR][1000 genomes]
rs9634839	0.93[EUR][1000 genomes]
rs9634840	0.93[EUR][1000 genomes]
rs9634844	0.86[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
2	chr13:51913400-51944600	Weak transcription	Aorta	Aorta
3	chr13:51918600-51945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:51919000-51944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:51932000-51945800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:51932000-51947400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:51932400-51944400	Weak transcription	Fetal Stomach	stomach
8	chr13:51932600-51944400	Weak transcription	Lung	lung
9	chr13:51933400-51945400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr13:51933600-51947600	Weak transcription	Brain Substantia Nigra	brain
11	chr13:51933800-51947400	Weak transcription	Brain Germinal Matrix	brain
12	chr13:51934000-51944400	Weak transcription	Esophagus	oesophagus
13	chr13:51934000-51947000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr13:51934200-51945000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
16	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:51934400-51945800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr13:51934400-51947400	Weak transcription	Psoas Muscle	Psoas
19	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:51934600-51944400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr13:51934600-51946200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
23	chr13:51934800-51944000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr13:51935000-51949400	Weak transcription	Colonic Mucosa	Colon
25	chr13:51935400-51944000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr13:51935400-51944200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
28	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
29	chr13:51935600-51954000	Weak transcription	Stomach Mucosa	stomach
30	chr13:51935600-51971400	Weak transcription	Gastric	stomach
31	chr13:51935800-51954800	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr13:51935800-51962000	Strong transcription	Dnd41	blood
33	chr13:51936000-51947600	Weak transcription	Small Intestine	intestine
34	chr13:51936200-51963600	Strong transcription	Liver	Liver
35	chr13:51936400-51943600	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
37	chr13:51936600-51944000	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:51937000-51949800	Weak transcription	Fetal Brain Male	brain
39	chr13:51937200-51944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:51937400-51953200	Strong transcription	Fetal Intestine Large	intestine
41	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:51937600-51945000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr13:51937600-51947400	Weak transcription	K562	blood
44	chr13:51937600-51954400	Weak transcription	Fetal Heart	heart
45	chr13:51938200-51944400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr13:51938400-51945200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr13:51938400-51959200	Strong transcription	Primary B cells from peripheral blood	blood
49	chr13:51938400-51959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr13:51938600-51945200	Strong transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links