Variant report

Variant	rs9316537
Chromosome Location	chr13:51955735-51955736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51953536..51956049-chr13:52026636..52028998,2	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11148219	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100084	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100112	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252200	0.83[CHD][hapmap]
rs17837214	0.83[CHD][hapmap]
rs17837217	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs2274061	1.00[ASW][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs2274929	0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs3825524	0.93[ASW][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes]
rs4941699	0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942995	0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942996	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942999	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61956917	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956937	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956942	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956945	0.94[ASN][1000 genomes]
rs61956952	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73195996	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321642	0.83[AFR][1000 genomes]
rs7333661	0.86[AFR][1000 genomes]
rs7333988	0.85[CEU][hapmap];0.90[GIH][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7335141	0.80[AFR][1000 genomes]
rs7338174	0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs7992891	0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316539	0.89[AFR][1000 genomes]
rs9526752	0.93[ASW][hapmap];0.90[LWK][hapmap];0.85[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs9526754	0.93[ASW][hapmap];0.93[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9535653	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs9563049	0.81[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563051	0.88[AFR][1000 genomes]
rs9563055	0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568580	0.81[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs9568586	0.81[CHB][hapmap];0.94[CHD][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568594	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568596	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568603	0.95[YRI][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
2	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
6	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
7	chr13:51935600-51971400	Weak transcription	Gastric	stomach
8	chr13:51935800-51962000	Strong transcription	Dnd41	blood
9	chr13:51936200-51963600	Strong transcription	Liver	Liver
10	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
11	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr13:51938400-51959200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr13:51938400-51959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr13:51938600-51959400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:51938600-51960400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr13:51938600-51961800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr13:51939200-51970600	Weak transcription	Brain Angular Gyrus	brain
19	chr13:51939400-51962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr13:51940400-51958000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:51940400-51959200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:51941200-51958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr13:51941800-51958000	Strong transcription	Duodenum Mucosa	Duodenum
24	chr13:51944800-51959600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr13:51944800-51964200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr13:51945000-51960400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr13:51945000-51964400	Strong transcription	HSMM	muscle
28	chr13:51945200-51970600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:51945400-51970600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr13:51945600-51961600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr13:51945800-51961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:51946200-51958000	Strong transcription	Adipose Nuclei	Adipose
35	chr13:51946200-51959200	Weak transcription	Aorta	Aorta
36	chr13:51946200-51959600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr13:51946200-51960200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr13:51946200-51963200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:51946400-51971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr13:51946600-51963600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:51946800-51956000	Strong transcription	NHDF-Ad	bronchial
43	chr13:51946800-51958000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr13:51946800-51959000	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr13:51946800-51959600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr13:51947000-51958000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr13:51947000-51963600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr13:51947000-51970800	Weak transcription	Brain Hippocampus Middle	brain
49	chr13:51948000-51960800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr13:51948000-51970800	Weak transcription	A549	lung

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