Variant report

Variant	rs61956952
Chromosome Location	chr13:52002547-52002548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52001846..52004227-chr13:52025679..52027392,2	MCF-7	breast:
2	chr13:51998975..52003064-chr13:52024296..52027890,4	K562	blood:
3	chr13:52001566..52003348-chr13:52376076..52378934,2	MCF-7	breast:
4	chr13:52000192..52002988-chr13:52004718..52007508,2	K562	blood:
5	chr13:52000566..52003254-chr13:52016445..52019373,2	K562	blood:
6	chr13:52000304..52002866-chr13:52009903..52011496,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000102796	Chromatin interaction
ENSG00000231856	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11148215	0.93[EUR][1000 genomes]
rs11148216	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148217	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838784	0.93[EUR][1000 genomes]
rs11839165	0.93[EUR][1000 genomes]
rs11842573	0.93[EUR][1000 genomes]
rs11842878	0.93[EUR][1000 genomes]
rs11843638	0.93[EUR][1000 genomes]
rs11843641	0.93[EUR][1000 genomes]
rs12100084	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100112	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584325	0.93[EUR][1000 genomes]
rs12584416	0.93[EUR][1000 genomes]
rs12585171	0.93[EUR][1000 genomes]
rs12585343	0.93[EUR][1000 genomes]
rs12586110	0.93[EUR][1000 genomes]
rs1413103	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1570549	0.85[EUR][1000 genomes]
rs1570550	0.85[EUR][1000 genomes]
rs17194921	0.93[EUR][1000 genomes]
rs17194928	0.93[EUR][1000 genomes]
rs17194935	0.93[EUR][1000 genomes]
rs17194955	0.93[EUR][1000 genomes]
rs17194985	0.93[EUR][1000 genomes]
rs17195027	0.93[EUR][1000 genomes]
rs17529985	0.86[EUR][1000 genomes]
rs17790799	0.93[EUR][1000 genomes]
rs17790811	0.93[EUR][1000 genomes]
rs17790838	0.93[EUR][1000 genomes]
rs4941699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942993	0.89[EUR][1000 genomes]
rs4942994	0.89[EUR][1000 genomes]
rs4942995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942996	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942997	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4942998	0.93[EUR][1000 genomes]
rs4942999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59024783	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59215783	0.85[EUR][1000 genomes]
rs60860538	0.85[EUR][1000 genomes]
rs61956888	0.85[EUR][1000 genomes]
rs61956889	0.85[EUR][1000 genomes]
rs61956909	0.93[EUR][1000 genomes]
rs61956910	0.93[EUR][1000 genomes]
rs61956911	0.86[EUR][1000 genomes]
rs61956912	0.93[EUR][1000 genomes]
rs61956913	0.93[EUR][1000 genomes]
rs61956914	0.93[EUR][1000 genomes]
rs61956915	0.93[EUR][1000 genomes]
rs61956916	0.93[EUR][1000 genomes]
rs61956917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956938	0.93[EUR][1000 genomes]
rs61956942	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956943	0.93[EUR][1000 genomes]
rs61956944	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61956945	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61956947	0.93[EUR][1000 genomes]
rs61956949	0.93[EUR][1000 genomes]
rs61956950	0.93[EUR][1000 genomes]
rs61956951	0.93[EUR][1000 genomes]
rs61956955	0.93[EUR][1000 genomes]
rs73195977	0.93[EUR][1000 genomes]
rs73195982	0.93[EUR][1000 genomes]
rs73195996	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197808	0.93[EUR][1000 genomes]
rs7333988	0.82[EUR][1000 genomes]
rs7400061	0.93[EUR][1000 genomes]
rs7988157	0.89[EUR][1000 genomes]
rs7990114	0.93[EUR][1000 genomes]
rs7992891	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995268	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8001625	0.85[EUR][1000 genomes]
rs9316535	0.93[EUR][1000 genomes]
rs9316537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563041	0.93[EUR][1000 genomes]
rs9563042	0.93[EUR][1000 genomes]
rs9563043	0.93[EUR][1000 genomes]
rs9563044	0.93[EUR][1000 genomes]
rs9563045	0.93[EUR][1000 genomes]
rs9563047	0.86[EUR][1000 genomes]
rs9563049	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563050	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563052	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563053	0.93[EUR][1000 genomes]
rs9563054	0.93[EUR][1000 genomes]
rs9563055	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563056	0.86[EUR][1000 genomes]
rs9568564	0.85[EUR][1000 genomes]
rs9568565	0.85[EUR][1000 genomes]
rs9568566	0.93[EUR][1000 genomes]
rs9568567	0.93[EUR][1000 genomes]
rs9568568	0.93[EUR][1000 genomes]
rs9568569	0.93[EUR][1000 genomes]
rs9568570	0.93[EUR][1000 genomes]
rs9568571	0.93[EUR][1000 genomes]
rs9568572	0.93[EUR][1000 genomes]
rs9568573	0.93[EUR][1000 genomes]
rs9568574	0.93[EUR][1000 genomes]
rs9568575	0.89[EUR][1000 genomes]
rs9568576	0.93[EUR][1000 genomes]
rs9568578	0.86[EUR][1000 genomes]
rs9568579	0.93[EUR][1000 genomes]
rs9568580	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568581	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9568585	0.93[EUR][1000 genomes]
rs9568586	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568588	0.93[EUR][1000 genomes]
rs9568589	0.93[EUR][1000 genomes]
rs9568590	0.93[EUR][1000 genomes]
rs9568591	0.93[EUR][1000 genomes]
rs9568592	0.93[EUR][1000 genomes]
rs9568593	0.93[EUR][1000 genomes]
rs9568594	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568596	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568609	0.86[EUR][1000 genomes]
rs9634685	0.93[EUR][1000 genomes]
rs9634838	0.93[EUR][1000 genomes]
rs9634839	0.93[EUR][1000 genomes]
rs9634840	0.93[EUR][1000 genomes]
rs9634844	0.86[EUR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
5	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
7	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
9	chr13:51978400-52003200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:51988800-52024400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr13:51990000-52016600	Weak transcription	Fetal Intestine Small	intestine
13	chr13:51990800-52003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:51991400-52003200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:51991400-52006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr13:51992400-52025400	Weak transcription	Esophagus	oesophagus
17	chr13:51993600-52003600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr13:51994600-52005600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr13:51995400-52002800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:51995400-52023400	Weak transcription	Fetal Kidney	kidney
21	chr13:51995400-52024600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr13:51995600-52002600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr13:51995600-52002800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:51995600-52003600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr13:51995600-52019000	Weak transcription	Gastric	stomach
26	chr13:51995600-52023400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:51995600-52025000	Weak transcription	Right Ventricle	heart
28	chr13:51995600-52025600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr13:51995800-52008000	Weak transcription	Hela-S3	cervix
30	chr13:51997000-52003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr13:51997000-52007200	Weak transcription	Psoas Muscle	Psoas
32	chr13:51997000-52025200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:51997200-52003800	Weak transcription	HMEC	breast
34	chr13:51997400-52003200	Weak transcription	HUVEC	blood vessel
35	chr13:51997400-52024400	Weak transcription	Thymus	Thymus
36	chr13:51997600-52003800	Weak transcription	K562	blood
37	chr13:51997600-52006600	Weak transcription	Fetal Heart	heart
38	chr13:51997600-52023200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr13:51997600-52023600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr13:51997800-52002600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:51999400-52007200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr13:51999800-52004600	Strong transcription	A549	lung
43	chr13:51999800-52006400	Weak transcription	Brain Angular Gyrus	brain
44	chr13:51999800-52011800	Weak transcription	Left Ventricle	heart
45	chr13:51999800-52022400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:51999800-52023000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr13:52000000-52002600	Weak transcription	NHLF	lung
48	chr13:52000000-52002800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr13:52000000-52006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr13:52000000-52007600	Strong transcription	Primary neutrophils fromperipheralblood	blood

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