Variant report

Variant	rs61956913
Chromosome Location	chr13:51918057-51918058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51913987..51916839-chr13:51917071..51920239,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253309	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs11148215	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11148216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11148217	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11148219	0.93[EUR][1000 genomes]
rs11838784	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11839165	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11842573	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11842878	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11843638	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11843641	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12100084	0.93[EUR][1000 genomes]
rs12100112	0.93[EUR][1000 genomes]
rs12584325	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12584416	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12585171	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12585343	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586110	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413103	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1570549	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1570550	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194921	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194928	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194935	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194955	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17194985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17195027	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17529985	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17790799	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790811	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17790838	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4941697	0.83[AMR][1000 genomes]
rs4941699	0.93[EUR][1000 genomes]
rs4942992	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4942993	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4942994	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4942995	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4942996	0.93[EUR][1000 genomes]
rs4942997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4942998	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4942999	0.93[EUR][1000 genomes]
rs59024783	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59215783	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60860538	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956888	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956889	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956909	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956910	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956911	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956912	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61956914	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61956916	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61956917	0.93[EUR][1000 genomes]
rs61956937	0.93[EUR][1000 genomes]
rs61956938	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956942	0.93[EUR][1000 genomes]
rs61956943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956945	0.86[EUR][1000 genomes]
rs61956947	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956949	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956950	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956951	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956952	0.93[EUR][1000 genomes]
rs61956955	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61958268	0.80[ASN][1000 genomes]
rs73195977	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73195982	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73195996	0.93[EUR][1000 genomes]
rs73197808	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7338174	0.81[EUR][1000 genomes]
rs7400061	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7988157	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7990114	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7992891	0.93[EUR][1000 genomes]
rs7995268	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8001625	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9316535	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9526756	0.80[ASN][1000 genomes]
rs9563041	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563042	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563043	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563044	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563045	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9563047	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9563049	0.93[EUR][1000 genomes]
rs9563050	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9563052	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9563053	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9563054	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9563055	0.93[EUR][1000 genomes]
rs9563056	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568564	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568565	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568566	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568567	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568568	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568569	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568570	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568571	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568572	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568573	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568574	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568575	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568576	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568578	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568579	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568580	0.81[EUR][1000 genomes]
rs9568581	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9568585	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568586	0.93[EUR][1000 genomes]
rs9568588	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568589	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568590	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568591	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568592	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568593	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568594	0.93[EUR][1000 genomes]
rs9568596	0.93[EUR][1000 genomes]
rs9568609	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9634685	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9634838	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634840	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634844	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
3	chr13:51906200-51935400	Weak transcription	HSMMtube	muscle
4	chr13:51907800-51933200	Weak transcription	Primary T cells from cord blood	blood
5	chr13:51911200-51920400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr13:51911800-51938600	Weak transcription	Pancreas	Pancrea
7	chr13:51913400-51944600	Weak transcription	Aorta	Aorta
8	chr13:51913800-51918200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:51914000-51918400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:51914000-51918400	Enhancers	NHDF-Ad	bronchial
11	chr13:51914200-51920200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:51914200-51926600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr13:51915200-51929400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr13:51915400-51934000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr13:51915800-51925400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:51916200-51918200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr13:51916400-51918600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:51916800-51931600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr13:51917200-51918600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:51917200-51918600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr13:51917200-51933600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr13:51917400-51918400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:51917400-51918400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr13:51917400-51922800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51917400-51922800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr13:51917600-51920000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr13:51917600-51926600	Weak transcription	HSMM	muscle
28	chr13:51917600-51933000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr13:51917600-51943200	Weak transcription	NHLF	lung
30	chr13:51917800-51942400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:51918000-51925400	Weak transcription	Liver	Liver

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