Variant report

Variant	rs9568591
Chromosome Location	chr13:51996582-51996583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr13:51996566-51996973	H1-hESC	embryonic stem cell:	n/a	n/a
2	USF1	chr13:51996570-51996990	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51995533..51997582-chr13:52026152..52028042,2	K562	blood:

Variant related genes	Relation type
INTS6	TF binding region
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs11148215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148216	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148217	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148219	0.93[EUR][1000 genomes]
rs11838784	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11839165	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11842573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842878	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843638	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843641	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100084	0.93[EUR][1000 genomes]
rs12100112	0.93[EUR][1000 genomes]
rs12584325	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584416	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585171	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12585343	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586110	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570549	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570550	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194921	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194928	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194935	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194955	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194985	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195027	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529985	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790799	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790811	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790838	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941697	0.80[AMR][1000 genomes]
rs4941699	0.93[EUR][1000 genomes]
rs4942992	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4942993	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942994	0.96[EUR][1000 genomes]
rs4942995	0.93[EUR][1000 genomes]
rs4942996	0.93[EUR][1000 genomes]
rs4942997	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942999	0.93[EUR][1000 genomes]
rs59024783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59215783	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60860538	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956888	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956889	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956909	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956910	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956911	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956912	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61956913	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956914	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956915	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956916	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61956917	0.93[EUR][1000 genomes]
rs61956937	0.93[EUR][1000 genomes]
rs61956938	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956942	0.93[EUR][1000 genomes]
rs61956943	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956944	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956945	0.86[EUR][1000 genomes]
rs61956947	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956949	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956950	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956952	0.93[EUR][1000 genomes]
rs61956955	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958268	1.00[ASN][1000 genomes]
rs73195977	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195982	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195996	0.93[EUR][1000 genomes]
rs73197808	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338174	0.81[EUR][1000 genomes]
rs7400061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988157	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990114	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7992891	0.93[EUR][1000 genomes]
rs7995268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001625	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316535	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526756	1.00[ASN][1000 genomes]
rs9563041	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563042	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563043	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563044	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563045	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563047	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9563049	0.93[EUR][1000 genomes]
rs9563050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563055	0.93[EUR][1000 genomes]
rs9563056	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568564	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568565	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568566	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568567	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568568	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568569	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568570	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568571	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568572	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9568573	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568574	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568575	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568576	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568578	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568579	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568580	0.81[EUR][1000 genomes]
rs9568581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568585	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568586	0.93[EUR][1000 genomes]
rs9568588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568594	0.93[EUR][1000 genomes]
rs9568596	0.93[EUR][1000 genomes]
rs9568609	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568610	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9634685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634838	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634839	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634840	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634844	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
6	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
9	chr13:51972000-51996800	Weak transcription	Ovary	ovary
10	chr13:51972000-51999400	Weak transcription	Small Intestine	intestine
11	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
13	chr13:51977000-51996800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr13:51978400-52003200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:51981600-51999400	Weak transcription	Brain Angular Gyrus	brain
16	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr13:51985000-51999400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr13:51986400-51996800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:51988200-52001000	Weak transcription	Aorta	Aorta
20	chr13:51988400-51996600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr13:51988400-51996600	Weak transcription	Psoas Muscle	Psoas
22	chr13:51988600-51999400	Weak transcription	Brain Anterior Caudate	brain
23	chr13:51988600-51999400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr13:51988800-51999400	Weak transcription	Brain Hippocampus Middle	brain
25	chr13:51988800-52024400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:51989800-51997800	Strong transcription	HSMM	muscle
27	chr13:51990000-51997200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:51990000-52016600	Weak transcription	Fetal Intestine Small	intestine
29	chr13:51990800-51999800	Weak transcription	Fetal Brain Female	brain
30	chr13:51990800-52003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:51991200-51996600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr13:51991200-51999400	Weak transcription	NHLF	lung
33	chr13:51991200-51999800	Weak transcription	A549	lung
34	chr13:51991400-52003200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr13:51991400-52006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr13:51992400-51998000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr13:51992400-52025400	Weak transcription	Esophagus	oesophagus
38	chr13:51992600-52002200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr13:51992800-51998000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr13:51993000-52002200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr13:51993600-51999800	Weak transcription	Fetal Lung	lung
42	chr13:51993600-52003600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr13:51993800-51996600	Weak transcription	Adipose Nuclei	Adipose
44	chr13:51993800-52001200	Weak transcription	NH-A	brain
45	chr13:51994000-51999400	Weak transcription	Colon Smooth Muscle	Colon
46	chr13:51994200-51996600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr13:51994200-51999200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr13:51994600-51997800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr13:51994600-52002200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr13:51994600-52005600	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links