Variant report

Variant	rs61956950
Chromosome Location	chr13:51989622-51989623
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51988410..51989984-chr13:51993011..51995128,2	MCF-7	breast:
2	chr13:51987608..51990025-chr13:52024384..52028286,4	K562	blood:
3	chr13:51987238..51991497-chr13:51991664..51994935,3	K562	blood:
4	chr13:51987958..51989852-chr13:52025454..52027336,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs11148215	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148216	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148217	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11148219	0.93[EUR][1000 genomes]
rs11838784	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11839165	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11842573	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11842878	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843638	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11843641	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12100084	0.93[EUR][1000 genomes]
rs12100112	0.93[EUR][1000 genomes]
rs12584325	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584416	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585171	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12585343	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12586110	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1413103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570549	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1570550	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194921	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194928	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194935	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194955	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17194985	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195027	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17529985	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790799	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790811	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17790838	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4941697	0.80[AMR][1000 genomes]
rs4941699	0.93[EUR][1000 genomes]
rs4942992	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4942993	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4942994	0.96[EUR][1000 genomes]
rs4942995	0.93[EUR][1000 genomes]
rs4942996	0.93[EUR][1000 genomes]
rs4942997	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942999	0.93[EUR][1000 genomes]
rs59024783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59215783	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60860538	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956888	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956889	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956909	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956910	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956911	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956912	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61956913	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61956914	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956915	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61956916	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61956917	0.93[EUR][1000 genomes]
rs61956937	0.93[EUR][1000 genomes]
rs61956938	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956942	0.93[EUR][1000 genomes]
rs61956943	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956944	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956945	0.86[EUR][1000 genomes]
rs61956947	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956952	0.93[EUR][1000 genomes]
rs61956955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61958268	1.00[ASN][1000 genomes]
rs73195977	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195982	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73195996	0.93[EUR][1000 genomes]
rs73197808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338174	0.81[EUR][1000 genomes]
rs7400061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7988157	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990114	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7992891	0.93[EUR][1000 genomes]
rs7995268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001625	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9316535	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9526756	1.00[ASN][1000 genomes]
rs9563041	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563042	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563043	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563044	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563045	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9563047	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9563049	0.93[EUR][1000 genomes]
rs9563050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563053	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563055	0.93[EUR][1000 genomes]
rs9563056	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568564	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568565	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568566	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568567	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568568	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568569	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568570	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568571	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568572	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9568573	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568574	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568575	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568576	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568578	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9568579	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568580	0.81[EUR][1000 genomes]
rs9568581	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9568585	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568586	0.93[EUR][1000 genomes]
rs9568588	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568589	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568591	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568592	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568593	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568594	0.93[EUR][1000 genomes]
rs9568596	0.93[EUR][1000 genomes]
rs9568609	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568610	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9634685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634838	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634839	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634840	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634844	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
6	chr13:51958200-51990000	Weak transcription	HMEC	breast
7	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
9	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:51971800-51990000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
15	chr13:51972000-51989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:51972000-51990000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr13:51972000-51990000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:51972000-51990000	Weak transcription	K562	blood
19	chr13:51972000-51990000	Weak transcription	NHEK	skin
20	chr13:51972000-51990000	Weak transcription	NHLF	lung
21	chr13:51972000-51993400	Weak transcription	Stomach Mucosa	stomach
22	chr13:51972000-51995000	Weak transcription	Placenta	Placenta
23	chr13:51972000-51995200	Weak transcription	HSMMtube	muscle
24	chr13:51972000-51996800	Weak transcription	Ovary	ovary
25	chr13:51972000-51999400	Weak transcription	Small Intestine	intestine
26	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
28	chr13:51972400-51996400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr13:51972600-51990000	Weak transcription	A549	lung
30	chr13:51972600-51993000	Weak transcription	Colon Smooth Muscle	Colon
31	chr13:51973200-51992000	Weak transcription	NHDF-Ad	bronchial
32	chr13:51973800-51993200	Weak transcription	Hela-S3	cervix
33	chr13:51974400-51989800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr13:51977000-51996800	Weak transcription	Brain Cingulate Gyrus	brain
35	chr13:51978400-51989800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr13:51978400-51990400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr13:51978400-51995200	Weak transcription	Gastric	stomach
38	chr13:51978400-52003200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr13:51980000-51990200	Weak transcription	Primary B cells from cord blood	blood
40	chr13:51980000-51995000	Weak transcription	Brain Substantia Nigra	brain
41	chr13:51980400-51990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:51980400-51990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr13:51980800-51989800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr13:51980800-51990000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr13:51981600-51999400	Weak transcription	Brain Angular Gyrus	brain
46	chr13:51982000-51989800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr13:51982800-51990000	Weak transcription	Fetal Kidney	kidney
48	chr13:51983800-51993000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr13:51985000-51990000	Weak transcription	NH-A	brain

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