Variant report

Variant	rs12100112
Chromosome Location	chr13:51969299-51969300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51968496..51970934-chr13:52376792..52378777,2	K562	blood:
2	chr13:51967878..51970855-chr13:52024564..52027900,3	K562	blood:
3	chr13:51966813..51968638-chr13:51968842..51971836,2	K562	blood:
4	chr13:51963532..51965939-chr13:51967724..51969542,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000231856	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102796	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11148215	0.93[EUR][1000 genomes]
rs11148216	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148217	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11148219	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838784	0.93[EUR][1000 genomes]
rs11839165	0.93[EUR][1000 genomes]
rs11842573	0.93[EUR][1000 genomes]
rs11842878	0.93[EUR][1000 genomes]
rs11843638	0.93[EUR][1000 genomes]
rs11843641	0.93[EUR][1000 genomes]
rs12100084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12584325	0.93[EUR][1000 genomes]
rs12584416	0.93[EUR][1000 genomes]
rs12585171	0.93[EUR][1000 genomes]
rs12585343	0.93[EUR][1000 genomes]
rs12586110	0.93[EUR][1000 genomes]
rs1413103	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1570549	0.85[EUR][1000 genomes]
rs1570550	0.85[EUR][1000 genomes]
rs17194921	0.93[EUR][1000 genomes]
rs17194928	0.93[EUR][1000 genomes]
rs17194935	0.93[EUR][1000 genomes]
rs17194955	0.93[EUR][1000 genomes]
rs17194985	0.93[EUR][1000 genomes]
rs17195027	0.93[EUR][1000 genomes]
rs17529985	0.86[EUR][1000 genomes]
rs17790799	0.93[EUR][1000 genomes]
rs17790811	0.93[EUR][1000 genomes]
rs17790838	0.93[EUR][1000 genomes]
rs4941699	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4942993	0.89[EUR][1000 genomes]
rs4942994	0.89[EUR][1000 genomes]
rs4942995	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942996	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942997	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4942998	0.93[EUR][1000 genomes]
rs4942999	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59024783	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59215783	0.85[EUR][1000 genomes]
rs60860538	0.85[EUR][1000 genomes]
rs61956888	0.85[EUR][1000 genomes]
rs61956889	0.85[EUR][1000 genomes]
rs61956909	0.93[EUR][1000 genomes]
rs61956910	0.93[EUR][1000 genomes]
rs61956911	0.86[EUR][1000 genomes]
rs61956912	0.93[EUR][1000 genomes]
rs61956913	0.93[EUR][1000 genomes]
rs61956914	0.93[EUR][1000 genomes]
rs61956915	0.93[EUR][1000 genomes]
rs61956916	0.93[EUR][1000 genomes]
rs61956917	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956937	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956938	0.93[EUR][1000 genomes]
rs61956942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956943	0.93[EUR][1000 genomes]
rs61956944	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs61956945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61956947	0.93[EUR][1000 genomes]
rs61956949	0.93[EUR][1000 genomes]
rs61956950	0.93[EUR][1000 genomes]
rs61956951	0.93[EUR][1000 genomes]
rs61956952	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61956955	0.93[EUR][1000 genomes]
rs73195977	0.93[EUR][1000 genomes]
rs73195982	0.93[EUR][1000 genomes]
rs73195996	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197808	0.93[EUR][1000 genomes]
rs7333988	0.82[EUR][1000 genomes]
rs7400061	0.93[EUR][1000 genomes]
rs7988157	0.89[EUR][1000 genomes]
rs7990114	0.93[EUR][1000 genomes]
rs7992891	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7995268	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs8001625	0.85[EUR][1000 genomes]
rs9316535	0.93[EUR][1000 genomes]
rs9316537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563041	0.93[EUR][1000 genomes]
rs9563042	0.93[EUR][1000 genomes]
rs9563043	0.93[EUR][1000 genomes]
rs9563044	0.93[EUR][1000 genomes]
rs9563045	0.93[EUR][1000 genomes]
rs9563047	0.86[EUR][1000 genomes]
rs9563049	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9563050	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563052	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9563053	0.93[EUR][1000 genomes]
rs9563054	0.93[EUR][1000 genomes]
rs9563055	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563056	0.86[EUR][1000 genomes]
rs9568564	0.85[EUR][1000 genomes]
rs9568565	0.85[EUR][1000 genomes]
rs9568566	0.93[EUR][1000 genomes]
rs9568567	0.93[EUR][1000 genomes]
rs9568568	0.93[EUR][1000 genomes]
rs9568569	0.93[EUR][1000 genomes]
rs9568570	0.93[EUR][1000 genomes]
rs9568571	0.93[EUR][1000 genomes]
rs9568572	0.93[EUR][1000 genomes]
rs9568573	0.93[EUR][1000 genomes]
rs9568574	0.93[EUR][1000 genomes]
rs9568575	0.89[EUR][1000 genomes]
rs9568576	0.93[EUR][1000 genomes]
rs9568578	0.86[EUR][1000 genomes]
rs9568579	0.93[EUR][1000 genomes]
rs9568580	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568581	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9568585	0.93[EUR][1000 genomes]
rs9568586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568588	0.93[EUR][1000 genomes]
rs9568589	0.93[EUR][1000 genomes]
rs9568590	0.93[EUR][1000 genomes]
rs9568591	0.93[EUR][1000 genomes]
rs9568592	0.93[EUR][1000 genomes]
rs9568593	0.93[EUR][1000 genomes]
rs9568594	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568596	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568609	0.86[EUR][1000 genomes]
rs9634685	0.93[EUR][1000 genomes]
rs9634838	0.93[EUR][1000 genomes]
rs9634839	0.93[EUR][1000 genomes]
rs9634840	0.93[EUR][1000 genomes]
rs9634844	0.86[EUR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51935600-51971400	Weak transcription	Gastric	stomach
2	chr13:51939200-51970600	Weak transcription	Brain Angular Gyrus	brain
3	chr13:51945200-51970600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:51945400-51970600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:51946400-51971600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr13:51947000-51970800	Weak transcription	Brain Hippocampus Middle	brain
10	chr13:51948000-51970800	Weak transcription	A549	lung
11	chr13:51948000-51971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:51948600-51971600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:51948600-51971600	Weak transcription	Small Intestine	intestine
14	chr13:51949000-51971400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:51949400-51971400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:51949400-51971400	Weak transcription	Esophagus	oesophagus
17	chr13:51949400-51971400	Weak transcription	Pancreas	Pancrea
18	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
19	chr13:51950000-51970600	Weak transcription	Brain Substantia Nigra	brain
20	chr13:51950000-51971400	Weak transcription	Fetal Stomach	stomach
21	chr13:51950000-51971400	Weak transcription	Left Ventricle	heart
22	chr13:51950000-51971800	Weak transcription	Lung	lung
23	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
25	chr13:51951800-51970600	Weak transcription	Hela-S3	cervix
26	chr13:51952400-51970600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:51952400-51971400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr13:51952600-51970800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr13:51952600-51970800	Weak transcription	HSMMtube	muscle
30	chr13:51952600-51971400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:51953200-51970600	Weak transcription	Colon Smooth Muscle	Colon
32	chr13:51954000-51970600	Weak transcription	K562	blood
33	chr13:51955200-51973600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr13:51957200-51971400	Weak transcription	Fetal Intestine Small	intestine
35	chr13:51957400-51978200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr13:51957800-51971600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr13:51957800-51978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
39	chr13:51958000-51970600	Weak transcription	Adipose Nuclei	Adipose
40	chr13:51958000-51970800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr13:51958000-51970800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr13:51958000-51971400	Weak transcription	Fetal Lung	lung
43	chr13:51958000-51971600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr13:51958000-51971600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
46	chr13:51958200-51971400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr13:51958200-51990000	Weak transcription	HMEC	breast
48	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr13:51959200-51969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:51959200-51981200	Weak transcription	Primary B cells from peripheral blood	blood

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