Variant report

Variant	rs9535653
Chromosome Location	chr13:51949630-51949631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2274061	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274929	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825524	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941696	0.85[EUR][1000 genomes]
rs4942989	0.85[EUR][1000 genomes]
rs4942991	0.85[EUR][1000 genomes]
rs6561634	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7321642	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7327381	0.80[YRI][hapmap]
rs7333661	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7335141	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989850	0.80[CEU][hapmap]
rs7996243	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7998084	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs8001311	0.80[ASN][1000 genomes]
rs9316537	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs9316539	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316545	0.81[CEU][hapmap]
rs9526752	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9526754	0.95[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526757	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9526765	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535645	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535669	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535670	0.80[CEU][hapmap]
rs9535672	0.80[ASN][1000 genomes]
rs9535673	0.80[ASN][1000 genomes]
rs9535674	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535677	0.80[ASN][1000 genomes]
rs9535692	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9568600	0.84[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9568603	0.80[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs9568612	0.81[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535653	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
2	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
6	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
7	chr13:51935600-51954000	Weak transcription	Stomach Mucosa	stomach
8	chr13:51935600-51971400	Weak transcription	Gastric	stomach
9	chr13:51935800-51954800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr13:51935800-51962000	Strong transcription	Dnd41	blood
11	chr13:51936200-51963600	Strong transcription	Liver	Liver
12	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
13	chr13:51937000-51949800	Weak transcription	Fetal Brain Male	brain
14	chr13:51937400-51953200	Strong transcription	Fetal Intestine Large	intestine
15	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:51937600-51954400	Weak transcription	Fetal Heart	heart
17	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr13:51938400-51959200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr13:51938400-51959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr13:51938600-51952200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:51938600-51959400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr13:51938600-51960400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr13:51938600-51961800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:51938800-51954400	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr13:51939200-51954400	Strong transcription	HMEC	breast
26	chr13:51939200-51954600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:51939200-51970600	Weak transcription	Brain Angular Gyrus	brain
28	chr13:51939400-51962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr13:51940200-51950000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr13:51940200-51954600	Strong transcription	Primary hematopoietic stem cells	blood
31	chr13:51940400-51958000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:51940400-51959200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:51940600-51952600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:51941200-51950000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr13:51941200-51954000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:51941200-51958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr13:51941600-51952600	Strong transcription	HepG2	liver
38	chr13:51941800-51958000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr13:51942000-51954600	Strong transcription	Primary B cells from cord blood	blood
40	chr13:51942200-51950200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr13:51942200-51952600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr13:51942400-51949800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr13:51942400-51950000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr13:51944400-51951400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr13:51944600-51952600	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr13:51944600-51953200	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr13:51944800-51959600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr13:51944800-51964200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:51945000-51952800	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr13:51945000-51954400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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