Variant report

Variant	rs2274061
Chromosome Location	chr13:51953541-51953542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51953536..51956049-chr13:52026636..52028998,2	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs2274929	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825524	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4941696	0.85[EUR][1000 genomes]
rs4942989	0.85[EUR][1000 genomes]
rs4942991	0.85[EUR][1000 genomes]
rs6561634	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7321642	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7333661	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7335141	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989850	0.82[CEU][hapmap]
rs7996243	1.00[CEU][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7998084	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap]
rs8001311	0.80[ASN][1000 genomes]
rs9316537	1.00[ASW][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes]
rs9316539	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316545	0.82[CEU][hapmap]
rs9526752	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9526754	1.00[ASW][hapmap];0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526757	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9526764	0.81[CEU][hapmap]
rs9526765	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535645	1.00[CEU][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535653	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535669	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535670	0.82[CEU][hapmap]
rs9535672	0.80[ASN][1000 genomes]
rs9535673	0.80[ASN][1000 genomes]
rs9535674	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535677	0.80[ASN][1000 genomes]
rs9535692	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535696	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs9535697	0.81[CEU][hapmap]
rs9563051	0.83[AFR][1000 genomes]
rs9568600	0.85[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs9568603	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs9568612	0.82[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2274061	INTS6	cis	lymphoblastoid	seeQTL
rs2274061	DDX26	cis	multi-tissue	Pritchard

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
2	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
5	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
6	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
7	chr13:51935600-51954000	Weak transcription	Stomach Mucosa	stomach
8	chr13:51935600-51971400	Weak transcription	Gastric	stomach
9	chr13:51935800-51954800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr13:51935800-51962000	Strong transcription	Dnd41	blood
11	chr13:51936200-51963600	Strong transcription	Liver	Liver
12	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
13	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:51937600-51954400	Weak transcription	Fetal Heart	heart
15	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr13:51938400-51959200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr13:51938400-51959600	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr13:51938600-51959400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:51938600-51960400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr13:51938600-51961800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:51938800-51954400	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr13:51939200-51954400	Strong transcription	HMEC	breast
23	chr13:51939200-51954600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:51939200-51970600	Weak transcription	Brain Angular Gyrus	brain
25	chr13:51939400-51962200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr13:51940200-51954600	Strong transcription	Primary hematopoietic stem cells	blood
27	chr13:51940400-51958000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr13:51940400-51959200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr13:51941200-51954000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr13:51941200-51958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:51941800-51958000	Strong transcription	Duodenum Mucosa	Duodenum
32	chr13:51942000-51954600	Strong transcription	Primary B cells from cord blood	blood
33	chr13:51944800-51959600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr13:51944800-51964200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr13:51945000-51954400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr13:51945000-51960400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr13:51945000-51964400	Strong transcription	HSMM	muscle
38	chr13:51945200-51970600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr13:51945200-51971600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:51945400-51954000	Strong transcription	HUVEC	blood vessel
41	chr13:51945400-51970600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr13:51945600-51961600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr13:51945800-51961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:51946200-51954400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr13:51946200-51958000	Strong transcription	Adipose Nuclei	Adipose
47	chr13:51946200-51959200	Weak transcription	Aorta	Aorta
48	chr13:51946200-51959600	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr13:51946200-51960200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr13:51946200-51963200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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