Variant report

Variant	rs7335141
Chromosome Location	chr13:51985323-51985324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51983250..51985669-chr13:52157006..52159227,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2274061	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2274929	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825524	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6561634	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7321642	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7333661	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8001311	0.81[ASN][1000 genomes]
rs9316537	0.80[AFR][1000 genomes]
rs9316539	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526752	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526754	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526757	0.82[ASN][1000 genomes]
rs9526765	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9535653	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535669	0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9535672	0.81[ASN][1000 genomes]
rs9535673	0.81[ASN][1000 genomes]
rs9535674	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9535677	0.81[ASN][1000 genomes]
rs9535692	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9563051	0.82[AFR][1000 genomes]
rs9568600	0.81[ASN][1000 genomes]
rs9568603	0.81[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
6	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
7	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
8	chr13:51958200-51990000	Weak transcription	HMEC	breast
9	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
14	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr13:51971800-51986600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:51971800-51990000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
21	chr13:51972000-51986600	Weak transcription	Fetal Brain Male	brain
22	chr13:51972000-51987800	Weak transcription	Adipose Nuclei	Adipose
23	chr13:51972000-51988000	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr13:51972000-51989600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr13:51972000-51989800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:51972000-51990000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr13:51972000-51990000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr13:51972000-51990000	Weak transcription	K562	blood
29	chr13:51972000-51990000	Weak transcription	NHEK	skin
30	chr13:51972000-51990000	Weak transcription	NHLF	lung
31	chr13:51972000-51993400	Weak transcription	Stomach Mucosa	stomach
32	chr13:51972000-51995000	Weak transcription	Placenta	Placenta
33	chr13:51972000-51995200	Weak transcription	HSMMtube	muscle
34	chr13:51972000-51996800	Weak transcription	Ovary	ovary
35	chr13:51972000-51999400	Weak transcription	Small Intestine	intestine
36	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
38	chr13:51972200-51986400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr13:51972200-51989600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr13:51972400-51985800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr13:51972400-51996400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr13:51972600-51986200	Weak transcription	Osteobl	bone
43	chr13:51972600-51990000	Weak transcription	A549	lung
44	chr13:51972600-51993000	Weak transcription	Colon Smooth Muscle	Colon
45	chr13:51972800-51989600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr13:51973200-51992000	Weak transcription	NHDF-Ad	bronchial
47	chr13:51973600-51988000	Weak transcription	Aorta	Aorta
48	chr13:51973800-51993200	Weak transcription	Hela-S3	cervix
49	chr13:51974000-51986400	Weak transcription	Fetal Lung	lung
50	chr13:51974200-51989400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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