Variant report

Variant	rs7321642
Chromosome Location	chr13:52006020-52006021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51999630..52001692-chr13:52003393..52006218,2	K562	blood:
2	chr13:52000192..52002988-chr13:52004718..52007508,2	K562	blood:
3	chr13:51996684..51999154-chr13:52005130..52007771,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17194948	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17195020	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2274061	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2274929	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2277443	1.00[JPT][hapmap]
rs3825524	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6561634	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7333661	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7335122	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7335141	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7337450	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7989850	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7996243	0.89[EUR][1000 genomes]
rs9316537	0.83[AFR][1000 genomes]
rs9316539	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9316541	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9316545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9526752	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9526754	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9526764	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9526765	0.87[EUR][1000 genomes]
rs9535645	0.88[EUR][1000 genomes]
rs9535646	1.00[JPT][hapmap]
rs9535652	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9535653	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9535655	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535660	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9535661	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535663	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535665	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535669	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9535670	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535674	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9535680	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9535692	0.83[EUR][1000 genomes]
rs9535697	1.00[CHB][hapmap]
rs9535699	0.82[CHB][hapmap]
rs9563046	1.00[JPT][hapmap]
rs9563051	0.84[AFR][1000 genomes]
rs9568612	1.00[CHB][hapmap]
rs9634842	0.82[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7321642	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
5	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
6	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
7	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:51988800-52024400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr13:51990000-52016600	Weak transcription	Fetal Intestine Small	intestine
10	chr13:51991400-52006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr13:51992400-52025400	Weak transcription	Esophagus	oesophagus
12	chr13:51995400-52023400	Weak transcription	Fetal Kidney	kidney
13	chr13:51995400-52024600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr13:51995600-52019000	Weak transcription	Gastric	stomach
15	chr13:51995600-52023400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:51995600-52025000	Weak transcription	Right Ventricle	heart
17	chr13:51995600-52025600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:51995800-52008000	Weak transcription	Hela-S3	cervix
19	chr13:51997000-52007200	Weak transcription	Psoas Muscle	Psoas
20	chr13:51997000-52025200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:51997400-52024400	Weak transcription	Thymus	Thymus
22	chr13:51997600-52006600	Weak transcription	Fetal Heart	heart
23	chr13:51997600-52023200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr13:51997600-52023600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr13:51999400-52007200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr13:51999800-52006400	Weak transcription	Brain Angular Gyrus	brain
27	chr13:51999800-52011800	Weak transcription	Left Ventricle	heart
28	chr13:51999800-52022400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr13:51999800-52023000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:52000000-52006200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr13:52000000-52007600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr13:52000400-52006800	Weak transcription	Primary T cells from cord blood	blood
33	chr13:52000600-52009800	Weak transcription	HSMMtube	muscle
34	chr13:52000600-52025200	Weak transcription	Small Intestine	intestine
35	chr13:52001000-52010000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr13:52001200-52022800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr13:52001400-52024600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:52001600-52006400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:52001600-52007600	Strong transcription	GM12878-XiMat	blood
40	chr13:52001600-52009200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr13:52001600-52024400	Weak transcription	Brain Cingulate Gyrus	brain
42	chr13:52001800-52009400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:52001800-52011400	Weak transcription	Stomach Mucosa	stomach
44	chr13:52001800-52023000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr13:52002000-52009800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr13:52002200-52006600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr13:52002200-52024000	Weak transcription	Brain Anterior Caudate	brain
48	chr13:52002400-52010400	Weak transcription	Primary B cells from cord blood	blood
49	chr13:52003600-52009400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr13:52003600-52009400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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