Variant report

Variant	rs7337450
Chromosome Location	chr13:51994216-51994217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51987238..51991497-chr13:51991664..51994935,3	K562	blood:
2	chr13:51994030..51996463-chr13:52024763..52027853,3	MCF-7	breast:
3	chr13:51988410..51989984-chr13:51993011..51995128,2	MCF-7	breast:
4	chr13:51992302..51994803-chr13:51997881..52000527,3	K562	blood:
5	chr13:51987155..51989233-chr13:51992087..51994561,2	MCF-7	breast:
6	chr13:51990141..51994470-chr13:51996200..51998444,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1028727	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17194948	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17195020	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026526	0.90[ASN][1000 genomes]
rs2408363	0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4628860	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56017742	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73197809	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73197821	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73197824	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7321642	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7328715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335122	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989850	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7998084	0.90[CEU][hapmap]
rs9316541	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316545	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9316546	0.90[ASN][1000 genomes]
rs9526757	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs9526758	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526764	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535640	0.83[EUR][1000 genomes]
rs9535646	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535652	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9535655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535660	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535670	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535671	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535678	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535682	0.98[ASN][1000 genomes]
rs9535683	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535689	0.88[ASN][1000 genomes]
rs9535694	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9535696	0.90[CEU][hapmap]
rs9535697	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535699	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9563046	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9568600	0.89[CEU][hapmap]
rs9568603	0.90[CEU][hapmap]
rs9568612	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9634842	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7337450	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
3	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
5	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
6	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
7	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
10	chr13:51972000-51995000	Weak transcription	Placenta	Placenta
11	chr13:51972000-51995200	Weak transcription	HSMMtube	muscle
12	chr13:51972000-51996800	Weak transcription	Ovary	ovary
13	chr13:51972000-51999400	Weak transcription	Small Intestine	intestine
14	chr13:51972000-52005200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:51972000-52016000	Weak transcription	Pancreas	Pancrea
16	chr13:51972400-51996400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:51977000-51996800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:51978400-51995200	Weak transcription	Gastric	stomach
19	chr13:51978400-52003200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:51980000-51995000	Weak transcription	Brain Substantia Nigra	brain
21	chr13:51981600-51999400	Weak transcription	Brain Angular Gyrus	brain
22	chr13:51984400-52024800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr13:51985000-51999400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:51985400-51995000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr13:51985600-51995200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:51985800-51995400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr13:51986400-51996800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr13:51988200-52001000	Weak transcription	Aorta	Aorta
29	chr13:51988400-51995200	Weak transcription	Left Ventricle	heart
30	chr13:51988400-51995200	Weak transcription	Right Atrium	heart
31	chr13:51988400-51996600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr13:51988400-51996600	Weak transcription	Psoas Muscle	Psoas
33	chr13:51988600-51999400	Weak transcription	Brain Anterior Caudate	brain
34	chr13:51988600-51999400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr13:51988800-51999400	Weak transcription	Brain Hippocampus Middle	brain
36	chr13:51988800-52024400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr13:51989800-51995200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr13:51989800-51997800	Strong transcription	HSMM	muscle
39	chr13:51990000-51995200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr13:51990000-51997200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr13:51990000-52016600	Weak transcription	Fetal Intestine Small	intestine
42	chr13:51990600-51995200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr13:51990600-51995400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr13:51990800-51994800	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr13:51990800-51995200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr13:51990800-51995200	Weak transcription	Fetal Kidney	kidney
47	chr13:51990800-51999800	Weak transcription	Fetal Brain Female	brain
48	chr13:51990800-52003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:51991200-51994800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr13:51991200-51994800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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