Variant report

Variant	rs9535683
Chromosome Location	chr13:52043385-52043386
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52025794..52034237-chr13:52040132..52048046,20	K562	blood:
2	chr13:52024267..52031024-chr13:52038927..52044194,9	MCF-7	breast:
3	chr13:52026056..52028727-chr13:52040719..52045413,5	K562	blood:
4	chr13:52041504..52043824-chr13:52049888..52052371,2	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs17075688	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17194948	0.80[ASN][1000 genomes]
rs17195020	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2026526	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2026527	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2408363	0.80[ASN][1000 genomes]
rs56017742	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6561634	0.80[EUR][1000 genomes]
rs73197809	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73197821	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73197824	0.91[EUR][1000 genomes]
rs73197826	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7328715	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335122	0.88[ASN][1000 genomes]
rs7335144	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7337450	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7989674	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7989850	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998084	0.94[EUR][1000 genomes]
rs8001311	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9316541	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9316545	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9316546	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526758	0.94[ASN][1000 genomes]
rs9526759	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526761	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9526764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526768	0.91[EUR][1000 genomes]
rs9535652	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535655	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535660	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535661	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535662	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535663	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535665	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535669	0.80[EUR][1000 genomes]
rs9535670	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535671	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535672	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9535674	0.80[EUR][1000 genomes]
rs9535677	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9535678	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535679	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9535680	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535682	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535687	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9535688	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9535689	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535690	0.94[EUR][1000 genomes]
rs9535693	0.94[EUR][1000 genomes]
rs9535694	0.91[EUR][1000 genomes]
rs9535696	0.93[EUR][1000 genomes]
rs9535697	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9535699	0.91[EUR][1000 genomes]
rs9563046	0.80[ASN][1000 genomes]
rs9568600	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9568603	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9568608	0.96[EUR][1000 genomes]
rs9568612	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9634842	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535683	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52031000-52044800	Weak transcription	Liver	Liver
2	chr13:52031800-52045400	Weak transcription	Primary B cells from cord blood	blood
3	chr13:52040400-52045000	Weak transcription	HepG2	liver
4	chr13:52041800-52052600	Weak transcription	Pancreas	Pancrea

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