Variant report

Variant	rs9535687
Chromosome Location	chr13:52057433-52057434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17075688	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2026526	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2026527	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197809	0.80[EUR][1000 genomes]
rs73197821	0.95[EUR][1000 genomes]
rs73197824	0.91[EUR][1000 genomes]
rs73197826	0.96[EUR][1000 genomes]
rs7989674	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989850	0.95[EUR][1000 genomes]
rs7998084	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8001311	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8001787	0.91[ASN][1000 genomes]
rs9316545	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9316546	0.97[EUR][1000 genomes]
rs9526757	0.88[ASN][1000 genomes]
rs9526761	0.80[EUR][1000 genomes]
rs9526764	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9526765	0.81[ASN][1000 genomes]
rs9526768	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535665	0.80[EUR][1000 genomes]
rs9535670	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9535671	0.95[EUR][1000 genomes]
rs9535672	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535673	0.89[ASN][1000 genomes]
rs9535677	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535678	0.90[EUR][1000 genomes]
rs9535679	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535680	0.90[EUR][1000 genomes]
rs9535682	0.92[EUR][1000 genomes]
rs9535683	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9535688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535689	0.96[EUR][1000 genomes]
rs9535690	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535692	0.84[ASN][1000 genomes]
rs9535693	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535694	0.91[EUR][1000 genomes]
rs9535696	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535697	0.95[EUR][1000 genomes]
rs9535699	0.91[EUR][1000 genomes]
rs9568600	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568603	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568608	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9568612	0.96[EUR][1000 genomes]
rs9634842	0.80[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535687	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52057000-52068000	Weak transcription	Osteobl	bone

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