Variant report

Variant	rs8001787
Chromosome Location	chr13:52069594-52069595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17075688	0.85[ASN][1000 genomes]
rs2026527	0.91[ASN][1000 genomes]
rs7989674	0.90[ASN][1000 genomes]
rs7998084	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs8001311	0.83[ASN][1000 genomes]
rs9526768	0.87[ASN][1000 genomes]
rs9535672	0.83[ASN][1000 genomes]
rs9535673	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535677	0.83[ASN][1000 genomes]
rs9535679	0.85[ASN][1000 genomes]
rs9535687	0.91[ASN][1000 genomes]
rs9535688	0.84[ASN][1000 genomes]
rs9535690	0.91[ASN][1000 genomes]
rs9535693	0.99[ASN][1000 genomes]
rs9535696	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9568600	0.83[ASN][1000 genomes]
rs9568603	0.83[ASN][1000 genomes]
rs9568608	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8001787	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52060200-52071200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:52068000-52069800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:52068400-52069600	Weak transcription	HSMMtube	muscle
4	chr13:52068600-52075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr13:52069400-52069800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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