Variant report

Variant	rs9568608
Chromosome Location	chr13:52054194-52054195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52025629..52027878-chr13:52053304..52055034,4	MCF-7	breast:
2	chr13:52048427..52051082-chr13:52053156..52054989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17075688	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2026526	0.98[EUR][1000 genomes]
rs2026527	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197809	0.81[EUR][1000 genomes]
rs73197821	0.96[EUR][1000 genomes]
rs73197824	0.92[EUR][1000 genomes]
rs73197826	0.97[EUR][1000 genomes]
rs7989674	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989850	0.96[EUR][1000 genomes]
rs7998084	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8001311	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8001787	0.91[ASN][1000 genomes]
rs9316545	0.97[EUR][1000 genomes]
rs9316546	0.98[EUR][1000 genomes]
rs9526757	0.88[ASN][1000 genomes]
rs9526761	0.81[EUR][1000 genomes]
rs9526764	0.96[EUR][1000 genomes]
rs9526765	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9526768	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535670	0.96[EUR][1000 genomes]
rs9535671	0.96[EUR][1000 genomes]
rs9535672	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535673	0.89[ASN][1000 genomes]
rs9535677	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535678	0.91[EUR][1000 genomes]
rs9535679	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9535680	0.91[EUR][1000 genomes]
rs9535682	0.93[EUR][1000 genomes]
rs9535683	0.96[EUR][1000 genomes]
rs9535687	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535688	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9535689	0.97[EUR][1000 genomes]
rs9535690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535692	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9535693	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535694	0.92[EUR][1000 genomes]
rs9535696	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535697	0.96[EUR][1000 genomes]
rs9535699	0.92[EUR][1000 genomes]
rs9568600	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568603	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568612	0.97[EUR][1000 genomes]
rs9634842	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9568608	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52053800-52054400	Enhancers	HepG2	liver
2	chr13:52053800-52056400	Weak transcription	Osteobl	bone

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