Variant report

Variant	rs9535694
Chromosome Location	chr13:52068431-52068432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52067216..52068746-chr13:52073277..52075722,2	MCF-7	breast:
2	chr13:52063269..52064773-chr13:52067294..52069618,2	MCF-7	breast:
3	chr13:52063193..52065069-chr13:52067043..52069174,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs17075688	0.89[EUR][1000 genomes]
rs17194948	1.00[AFR][1000 genomes]
rs17195020	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2026526	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026527	0.90[EUR][1000 genomes]
rs2408363	1.00[AFR][1000 genomes]
rs4628860	1.00[AFR][1000 genomes]
rs56017742	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73197809	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73197821	0.91[EUR][1000 genomes]
rs73197824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197826	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7328715	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7335122	1.00[AFR][1000 genomes]
rs7335144	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7337450	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7989674	0.88[EUR][1000 genomes]
rs7989850	0.91[EUR][1000 genomes]
rs7998084	0.93[EUR][1000 genomes]
rs8001311	0.89[EUR][1000 genomes]
rs9316541	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9316545	0.92[EUR][1000 genomes]
rs9316546	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526759	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9526761	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526764	0.91[EUR][1000 genomes]
rs9526768	0.90[EUR][1000 genomes]
rs9535652	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9535655	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9535660	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535661	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535662	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535663	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535665	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9535670	0.91[EUR][1000 genomes]
rs9535671	0.91[EUR][1000 genomes]
rs9535672	0.89[EUR][1000 genomes]
rs9535677	0.89[EUR][1000 genomes]
rs9535678	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535679	0.89[EUR][1000 genomes]
rs9535680	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535682	0.87[EUR][1000 genomes]
rs9535683	0.91[EUR][1000 genomes]
rs9535687	0.91[EUR][1000 genomes]
rs9535688	0.91[EUR][1000 genomes]
rs9535689	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535690	0.93[EUR][1000 genomes]
rs9535693	0.93[EUR][1000 genomes]
rs9535696	0.93[EUR][1000 genomes]
rs9535697	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563046	1.00[AFR][1000 genomes]
rs9568600	0.89[EUR][1000 genomes]
rs9568603	0.89[EUR][1000 genomes]
rs9568608	0.92[EUR][1000 genomes]
rs9568612	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634842	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535694	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52060200-52071200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:52068000-52068600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:52068000-52068800	Enhancers	Osteobl	bone
4	chr13:52068000-52069800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:52068200-52068600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr13:52068200-52068600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:52068200-52068600	Enhancers	HSMM	muscle
8	chr13:52068200-52068600	Enhancers	NHLF	lung
9	chr13:52068400-52069600	Weak transcription	HSMMtube	muscle

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