Variant report

Variant	rs73197824
Chromosome Location	chr13:52073432-52073433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr13:52073334-52073459	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr13:52071860..52074222-chr13:52078009..52079956,2	K562	blood:
2	chr13:52067216..52068746-chr13:52073277..52075722,2	MCF-7	breast:
3	chr13:52024284..52027238-chr13:52071147..52074496,4	K562	blood:
4	chr13:52071860..52074973-chr13:52078009..52079956,3	K562	blood:

Variant related genes	Relation type
SNRPGP11	TF binding region
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs17075688	0.89[EUR][1000 genomes]
rs17194948	1.00[AFR][1000 genomes]
rs17195020	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2026526	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026527	0.90[EUR][1000 genomes]
rs2408363	1.00[AFR][1000 genomes]
rs4628860	1.00[AFR][1000 genomes]
rs56017742	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73197809	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73197821	0.91[EUR][1000 genomes]
rs73197826	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7328715	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7335122	1.00[AFR][1000 genomes]
rs7335144	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7337450	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7989674	0.88[EUR][1000 genomes]
rs7989850	0.91[EUR][1000 genomes]
rs7998084	0.93[EUR][1000 genomes]
rs8001311	0.89[EUR][1000 genomes]
rs9316541	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9316545	0.92[EUR][1000 genomes]
rs9316546	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526759	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9526761	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9526764	0.91[EUR][1000 genomes]
rs9526768	0.90[EUR][1000 genomes]
rs9535652	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9535655	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9535660	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9535661	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535662	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535663	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9535665	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9535670	0.91[EUR][1000 genomes]
rs9535671	0.91[EUR][1000 genomes]
rs9535672	0.89[EUR][1000 genomes]
rs9535677	0.89[EUR][1000 genomes]
rs9535678	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535679	0.89[EUR][1000 genomes]
rs9535680	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535682	0.87[EUR][1000 genomes]
rs9535683	0.91[EUR][1000 genomes]
rs9535687	0.91[EUR][1000 genomes]
rs9535688	0.91[EUR][1000 genomes]
rs9535689	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535690	0.93[EUR][1000 genomes]
rs9535693	0.93[EUR][1000 genomes]
rs9535694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535696	0.93[EUR][1000 genomes]
rs9535697	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563046	1.00[AFR][1000 genomes]
rs9568600	0.89[EUR][1000 genomes]
rs9568603	0.89[EUR][1000 genomes]
rs9568608	0.92[EUR][1000 genomes]
rs9568612	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9634842	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52068600-52075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:52069800-52075000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:52070600-52075800	Weak transcription	HSMMtube	muscle
4	chr13:52072000-52075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr13:52073200-52074200	Enhancers	HepG2	liver

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