Variant report

Variant	rs7998084
Chromosome Location	chr13:52073129-52073130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52071860..52074222-chr13:52078009..52079956,2	K562	blood:
2	chr13:52024284..52027238-chr13:52071147..52074496,4	K562	blood:
3	chr13:52071860..52074973-chr13:52078009..52079956,3	K562	blood:

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs17075688	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194948	0.90[CEU][hapmap]
rs17195020	0.90[CEU][hapmap]
rs2026526	0.97[EUR][1000 genomes]
rs2026527	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274061	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[CHD][hapmap]
rs2274929	0.82[CEU][hapmap];0.92[CHB][hapmap]
rs3825524	0.82[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap]
rs73197821	0.94[EUR][1000 genomes]
rs73197824	0.93[EUR][1000 genomes]
rs73197826	0.98[EUR][1000 genomes]
rs7335122	0.89[CEU][hapmap]
rs7337450	0.90[CEU][hapmap]
rs7989674	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7989850	1.00[CEU][hapmap];0.82[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs7996243	0.82[CEU][hapmap]
rs8001311	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8001787	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9316541	0.90[CEU][hapmap]
rs9316545	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9316546	0.97[EUR][1000 genomes]
rs9526752	0.81[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap]
rs9526754	0.89[CHD][hapmap]
rs9526757	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs9526764	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9526768	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535645	0.82[CEU][hapmap];0.80[CHD][hapmap]
rs9535646	0.90[CEU][hapmap]
rs9535652	0.90[CEU][hapmap]
rs9535653	0.80[CEU][hapmap];0.83[CHB][hapmap]
rs9535655	0.89[CEU][hapmap]
rs9535660	0.89[CEU][hapmap]
rs9535661	0.90[CEU][hapmap]
rs9535662	0.90[CEU][hapmap]
rs9535663	0.90[CEU][hapmap]
rs9535665	0.90[CEU][hapmap]
rs9535670	1.00[CEU][hapmap];0.82[GIH][hapmap];0.96[TSI][hapmap];0.94[EUR][1000 genomes]
rs9535671	0.94[EUR][1000 genomes]
rs9535672	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535673	0.82[ASN][1000 genomes]
rs9535677	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535678	0.89[EUR][1000 genomes]
rs9535679	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535680	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs9535682	0.91[EUR][1000 genomes]
rs9535683	0.94[EUR][1000 genomes]
rs9535687	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535688	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535689	0.98[EUR][1000 genomes]
rs9535690	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535692	0.80[EUR][1000 genomes]
rs9535693	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535694	0.93[EUR][1000 genomes]
rs9535696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535697	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9535699	0.90[CEU][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes]
rs9563046	0.90[CEU][hapmap]
rs9568600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.82[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568608	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568612	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs9634842	0.87[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7998084	DDX26	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52068600-52075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:52069800-52075000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:52070600-52075800	Weak transcription	HSMMtube	muscle
4	chr13:52072000-52075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links