Variant report

Variant	rs9568612
Chromosome Location	chr13:52075142-52075143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr13:52074934-52075316	HL-60	blood:	n/a	chr13:52075081-52075094
2	POLR2A	chr13:52074802-52075250	SK-N-MC	brain:	n/a	n/a
3	SPI1	chr13:52074959-52075177	GM12891	blood:	n/a	chr13:52075081-52075094

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52067216..52068746-chr13:52073277..52075722,2	MCF-7	breast:

Variant related genes	Relation type
SNRPGP11	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs17075688	0.94[EUR][1000 genomes]
rs17194948	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs17195020	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs2026526	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2026527	0.95[EUR][1000 genomes]
rs2274061	0.82[CEU][hapmap]
rs2274929	0.82[CEU][hapmap]
rs3825524	0.82[CEU][hapmap]
rs73197809	0.81[EUR][1000 genomes]
rs73197821	0.96[EUR][1000 genomes]
rs73197824	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7321642	1.00[CHB][hapmap]
rs7335122	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs7337450	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7989674	0.92[EUR][1000 genomes]
rs7989850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7996243	0.82[CEU][hapmap]
rs7998084	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs8001311	0.94[EUR][1000 genomes]
rs9316541	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs9316545	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9316546	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9526752	0.81[CEU][hapmap]
rs9526757	0.80[CEU][hapmap]
rs9526761	0.81[EUR][1000 genomes]
rs9526764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9526768	0.95[EUR][1000 genomes]
rs9535645	0.82[CEU][hapmap]
rs9535646	0.90[CEU][hapmap]
rs9535652	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs9535653	0.81[CEU][hapmap]
rs9535655	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535660	0.90[CEU][hapmap];0.85[CHB][hapmap]
rs9535661	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535662	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535663	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535665	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs9535670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535671	0.96[EUR][1000 genomes]
rs9535672	0.94[EUR][1000 genomes]
rs9535677	0.94[EUR][1000 genomes]
rs9535678	0.91[EUR][1000 genomes]
rs9535679	0.94[EUR][1000 genomes]
rs9535680	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs9535682	0.92[EUR][1000 genomes]
rs9535683	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535687	0.96[EUR][1000 genomes]
rs9535688	0.96[EUR][1000 genomes]
rs9535689	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535690	0.98[EUR][1000 genomes]
rs9535693	0.98[EUR][1000 genomes]
rs9535694	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535696	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9535697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535699	0.90[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9563046	0.90[CEU][hapmap]
rs9568600	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9568603	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9568608	0.97[EUR][1000 genomes]
rs9634842	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9568612	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52070600-52075800	Weak transcription	HSMMtube	muscle
2	chr13:52072000-52075400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:52074000-52076000	Enhancers	Liver	Liver
4	chr13:52074200-52076000	Enhancers	Pancreas	Pancrea
5	chr13:52074400-52076200	Enhancers	HepG2	liver
6	chr13:52074400-52076400	Enhancers	GM12878-XiMat	blood
7	chr13:52075000-52076800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:52075000-52076800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:52075000-52076800	Enhancers	Osteobl	bone
10	chr13:52075000-52077000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:52075000-52077000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:52075000-52077000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr13:52075000-52077000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr13:52075000-52077000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr13:52075000-52077000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr13:52075000-52077000	Enhancers	NHDF-Ad	bronchial

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