Variant report

Variant	rs9535678
Chromosome Location	chr13:52036017-52036018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs17075688	0.93[EUR][1000 genomes]
rs17194948	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17195020	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026526	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2026527	0.89[EUR][1000 genomes]
rs2277443	0.89[JPT][hapmap]
rs2408363	0.88[JPT][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4628860	1.00[AFR][1000 genomes]
rs56017742	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73197809	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73197821	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73197824	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73197826	0.91[EUR][1000 genomes]
rs7321642	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7328715	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7335122	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7335144	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7337450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7989674	0.92[EUR][1000 genomes]
rs7989850	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7998084	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs8001311	0.93[EUR][1000 genomes]
rs9316541	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316545	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9316546	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9526757	0.90[CEU][hapmap]
rs9526758	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526759	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526761	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9526764	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526768	0.86[EUR][1000 genomes]
rs9535646	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9535652	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535660	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9535662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535670	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535671	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535672	0.93[EUR][1000 genomes]
rs9535677	0.93[EUR][1000 genomes]
rs9535679	0.93[EUR][1000 genomes]
rs9535680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535683	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535687	0.90[EUR][1000 genomes]
rs9535688	0.90[EUR][1000 genomes]
rs9535689	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9535690	0.89[EUR][1000 genomes]
rs9535693	0.89[EUR][1000 genomes]
rs9535694	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535696	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs9535697	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs9535699	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9563046	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9568600	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568603	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs9568608	0.91[EUR][1000 genomes]
rs9568612	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs9634842	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535678	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52030600-52038800	Weak transcription	HepG2	liver
2	chr13:52030800-52036200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:52030800-52036200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:52031000-52039800	Weak transcription	A549	lung
5	chr13:52031000-52044800	Weak transcription	Liver	Liver
6	chr13:52031200-52036200	Weak transcription	Gastric	stomach
7	chr13:52031200-52041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:52031400-52036200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:52031400-52036200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr13:52031400-52036600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr13:52031400-52036800	Weak transcription	Fetal Stomach	stomach
12	chr13:52031400-52037000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:52031600-52036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr13:52031600-52041600	Weak transcription	Pancreas	Pancrea
15	chr13:52031800-52045400	Weak transcription	Primary B cells from cord blood	blood
16	chr13:52034800-52036600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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