Variant report

Variant	rs73197826
Chromosome Location	chr13:52076113-52076114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52075182..52076821-chr13:52157397..52159026,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs17075688	0.94[EUR][1000 genomes]
rs2026526	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2026527	0.95[EUR][1000 genomes]
rs73197809	0.81[EUR][1000 genomes]
rs73197821	0.96[EUR][1000 genomes]
rs73197824	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7989674	0.92[EUR][1000 genomes]
rs7989850	0.96[EUR][1000 genomes]
rs7998084	0.98[EUR][1000 genomes]
rs8001311	0.94[EUR][1000 genomes]
rs9316545	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9316546	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9526761	0.81[EUR][1000 genomes]
rs9526764	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9526768	0.95[EUR][1000 genomes]
rs9535670	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535671	0.96[EUR][1000 genomes]
rs9535672	0.94[EUR][1000 genomes]
rs9535677	0.94[EUR][1000 genomes]
rs9535678	0.91[EUR][1000 genomes]
rs9535679	0.94[EUR][1000 genomes]
rs9535680	0.91[EUR][1000 genomes]
rs9535682	0.92[EUR][1000 genomes]
rs9535683	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9535687	0.96[EUR][1000 genomes]
rs9535688	0.96[EUR][1000 genomes]
rs9535689	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9535690	0.98[EUR][1000 genomes]
rs9535693	0.98[EUR][1000 genomes]
rs9535694	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535696	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9535697	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9535699	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568600	0.94[EUR][1000 genomes]
rs9568603	0.94[EUR][1000 genomes]
rs9568608	0.97[EUR][1000 genomes]
rs9568612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9634842	0.81[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52074400-52076200	Enhancers	HepG2	liver
2	chr13:52074400-52076400	Enhancers	GM12878-XiMat	blood
3	chr13:52075000-52076800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:52075000-52076800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:52075000-52076800	Enhancers	Osteobl	bone
6	chr13:52075000-52077000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:52075000-52077000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:52075000-52077000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr13:52075000-52077000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:52075000-52077000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr13:52075000-52077000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr13:52075000-52077000	Enhancers	NHDF-Ad	bronchial
13	chr13:52075400-52076800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr13:52075400-52077000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr13:52075600-52077000	Enhancers	NH-A	brain
16	chr13:52075800-52076800	Enhancers	HMEC	breast
17	chr13:52075800-52076800	Enhancers	HSMMtube	muscle
18	chr13:52075800-52076800	Enhancers	NHLF	lung
19	chr13:52075800-52077000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:52075800-52077000	Enhancers	Primary B cells from peripheral blood	blood
21	chr13:52075800-52077000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:52075800-52077200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr13:52075800-52077200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr13:52075800-52077400	Enhancers	Primary hematopoietic stem cells	blood
25	chr13:52075800-52077400	Enhancers	HSMM	muscle
26	chr13:52075800-52077400	Enhancers	NHEK	skin
27	chr13:52076000-52076600	Enhancers	Aorta	Aorta
28	chr13:52076000-52076800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr13:52076000-52077000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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