Variant report

Variant	rs9535696
Chromosome Location	chr13:52071091-52071092
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr13:52070978-52071235	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52024284..52029908-chr13:52069886..52073128,6	K562	blood:
2	chr13:52026302..52028472-chr13:52069042..52071707,2	MCF-7	breast:

Variant related genes	Relation type
SNRPGP11	TF binding region
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs17075688	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194948	0.90[CEU][hapmap]
rs17195020	0.89[CEU][hapmap]
rs2026526	0.96[EUR][1000 genomes]
rs2026527	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2274061	0.81[CEU][hapmap];0.92[CHB][hapmap]
rs2274929	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs3825524	0.81[CEU][hapmap];0.86[CHB][hapmap]
rs73197821	0.93[EUR][1000 genomes]
rs73197824	0.93[EUR][1000 genomes]
rs73197826	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7335122	0.89[CEU][hapmap]
rs7337450	0.90[CEU][hapmap]
rs7989674	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7989850	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7996243	0.81[CEU][hapmap]
rs7998084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001311	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8001787	1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9316541	0.90[CEU][hapmap]
rs9316545	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9316546	0.96[EUR][1000 genomes]
rs9526752	0.80[CEU][hapmap];0.86[CHB][hapmap]
rs9526757	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs9526764	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9526768	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9535645	0.81[CEU][hapmap]
rs9535646	0.90[CEU][hapmap]
rs9535652	0.89[CEU][hapmap]
rs9535655	0.89[CEU][hapmap]
rs9535660	0.89[CEU][hapmap]
rs9535661	0.89[CEU][hapmap]
rs9535662	0.90[CEU][hapmap]
rs9535663	0.89[CEU][hapmap]
rs9535665	0.89[CEU][hapmap]
rs9535670	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9535671	0.93[EUR][1000 genomes]
rs9535672	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535673	0.82[ASN][1000 genomes]
rs9535677	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9535678	0.88[EUR][1000 genomes]
rs9535679	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535680	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs9535682	0.90[EUR][1000 genomes]
rs9535683	0.93[EUR][1000 genomes]
rs9535687	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535688	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9535689	0.97[EUR][1000 genomes]
rs9535690	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9535693	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9535694	0.93[EUR][1000 genomes]
rs9535697	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9535699	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs9563046	0.89[CEU][hapmap]
rs9568600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568608	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9568612	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9634842	0.87[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535696	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52060200-52071200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:52068600-52075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:52069800-52075000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr13:52070600-52075800	Weak transcription	HSMMtube	muscle

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