Variant report

Variant	rs9535640
Chromosome Location	chr13:51884526-51884527
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51883357..51884920-chr13:51891392..51893202,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1028727	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17194948	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17195020	0.85[EUR][1000 genomes]
rs2408363	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4628860	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56017742	0.85[EUR][1000 genomes]
rs73197809	0.80[EUR][1000 genomes]
rs7328715	0.85[EUR][1000 genomes]
rs7335122	0.83[EUR][1000 genomes]
rs7335144	0.83[EUR][1000 genomes]
rs7337450	0.83[EUR][1000 genomes]
rs9316541	0.83[EUR][1000 genomes]
rs9526757	0.81[EUR][1000 genomes]
rs9526758	0.84[EUR][1000 genomes]
rs9526759	0.83[EUR][1000 genomes]
rs9526761	0.80[EUR][1000 genomes]
rs9535636	0.89[EUR][1000 genomes]
rs9535638	0.88[EUR][1000 genomes]
rs9535644	0.92[EUR][1000 genomes]
rs9535646	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9535652	0.85[EUR][1000 genomes]
rs9535655	0.85[EUR][1000 genomes]
rs9535660	0.85[EUR][1000 genomes]
rs9535661	0.83[EUR][1000 genomes]
rs9535662	0.83[EUR][1000 genomes]
rs9535663	0.83[EUR][1000 genomes]
rs9535665	0.82[EUR][1000 genomes]
rs9563046	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9634842	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535640	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
3	chr13:51877000-51887800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:51877000-51889200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51877600-51886600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:51877800-51885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:51877800-51890000	Weak transcription	Lung	lung
8	chr13:51879800-51889200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51880000-51885400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:51880400-51885000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:51880600-51885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr13:51881600-51889400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:51881800-51889000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:51882200-51886200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr13:51883400-51885000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:51883400-51885000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:51883400-51885000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr13:51883400-51885200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr13:51883400-51887800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:51883400-51889000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:51883400-51889200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:51883600-51885200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr13:51883600-51885200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr13:51884000-51885000	Weak transcription	Brain Inferior Temporal Lobe	brain

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