Variant report

Variant	rs9535636
Chromosome Location	chr13:51867476-51867477
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51865697..51869236-chr13:52025777..52029444,4	K562	blood:
2	chr13:51867466..51870249-chr13:51871645..51874194,2	K562	blood:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1028727	0.81[EUR][1000 genomes]
rs17194948	0.81[EUR][1000 genomes]
rs4628860	0.87[EUR][1000 genomes]
rs57959933	0.94[ASN][1000 genomes]
rs9535638	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9535640	0.89[EUR][1000 genomes]
rs9535644	0.81[EUR][1000 genomes]
rs9535646	0.81[EUR][1000 genomes]
rs9563046	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9535636	INTS6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51855600-51875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51857000-51871400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:51862400-51870800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51865000-51867600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:51865000-51867600	Enhancers	Fetal Heart	heart
7	chr13:51865400-51867600	Enhancers	Ovary	ovary
8	chr13:51865400-51867600	Enhancers	Pancreas	Pancrea
9	chr13:51866200-51871200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr13:51866200-51871400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr13:51866400-51867600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr13:51866800-51867600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr13:51866800-51867600	Enhancers	Left Ventricle	heart
14	chr13:51866800-51870600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr13:51867000-51867600	Enhancers	Right Ventricle	heart
16	chr13:51867000-51867600	Bivalent Enhancer	HepG2	liver
17	chr13:51867000-51870800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:51867200-51867600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:51867200-51867600	Enhancers	Spleen	Spleen
20	chr13:51867200-51871000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr13:51867200-51871200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr13:51867200-51873000	Weak transcription	Brain Anterior Caudate	brain
23	chr13:51867400-51870400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr13:51867400-51870800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr13:51867400-51872800	Weak transcription	Fetal Stomach	stomach

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