Variant report

Variant	rs9634684
Chromosome Location	chr13:51905446-51905447
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr13:51905401-51906084	GM12878	blood:	n/a	n/a
2	TBL1XR1	chr13:51904902-51905965	GM12878	blood:	n/a	n/a
3	RELA	chr13:51904903-51905973	GM10847	blood:	n/a	chr13:51905630-51905639 chr13:51905630-51905639
4	USF1	chr13:51905436-51905670	GM12878	blood:	n/a	n/a
5	MYC	chr13:51904762-51905550	NB4	blood:	n/a	n/a
6	MAZ	chr13:51904893-51905539	GM12878	blood:	n/a	n/a
7	EBF1	chr13:51904852-51906049	GM12878	blood:	n/a	n/a
8	POU2F2	chr13:51905443-51906022	GM12891	blood:	n/a	chr13:51905779-51905792
9	RELA	chr13:51904921-51906090	GM19099	blood:	n/a	chr13:51905630-51905639 chr13:51905630-51905639
10	RUNX3	chr13:51905362-51906141	GM12878	blood:	n/a	n/a
11	RELA	chr13:51904872-51906379	GM12891	blood:	n/a	chr13:51905630-51905639 chr13:51905630-51905639
12	RELA	chr13:51904878-51905991	GM18951	blood:	n/a	chr13:51905630-51905639 chr13:51905630-51905639
13	BHLHE40	chr13:51904773-51905993	GM12878	blood:	n/a	n/a
14	PML	chr13:51905441-51906216	GM12878	blood:	n/a	n/a
15	MAX	chr13:51904849-51906127	NB4	blood:	n/a	chr13:51905549-51905568 chr13:51905554-51905564 chr13:51905553-51905564 chr13:51905553-51905563 chr13:51905552-51905565 chr13:51905555-51905562 chr13:51905553-51905564 chr13:51905552-51905565 chr13:51905554-51905564 chr13:51905553-51905562 chr13:51905554-51905563 chr13:51905554-51905563 chr13:51905552-51905565
16	CHD2	chr13:51904841-51906173	GM12878	blood:	n/a	n/a
17	MAX	chr13:51904848-51906001	GM12878	blood:	n/a	chr13:51905549-51905568 chr13:51905554-51905564 chr13:51905553-51905564 chr13:51905553-51905563 chr13:51905552-51905565 chr13:51905555-51905562 chr13:51905553-51905564 chr13:51905552-51905565 chr13:51905554-51905564 chr13:51905553-51905562 chr13:51905554-51905563 chr13:51905554-51905563 chr13:51905552-51905565
18	NFIC	chr13:51904735-51905876	GM12878	blood:	n/a	n/a
19	MEF2C	chr13:51904751-51905651	GM12878	blood:	n/a	chr13:51905596-51905617 chr13:51905090-51905104 chr13:51905085-51905106 chr13:51905085-51905106
20	USF1	chr13:51905442-51905609	GM12878	blood:	n/a	n/a
21	RELA	chr13:51904893-51906037	GM18505	blood:	n/a	chr13:51905630-51905639 chr13:51905630-51905639
22	RUNX3	chr13:51905444-51906139	GM12878	blood:	n/a	n/a
23	POU2F2	chr13:51905427-51905751	GM12878	blood:	n/a	n/a
24	POU2F2	chr13:51905419-51905898	GM12878	blood:	n/a	chr13:51905779-51905792
25	SP1	chr13:51905405-51905821	GM12878	blood:	n/a	chr13:51905561-51905568
26	ZNF384	chr13:51905006-51905681	GM12878	blood:	n/a	n/a
27	USF2	chr13:51905379-51905776	GM12878	blood:	n/a	n/a
28	EP300	chr13:51904851-51905969	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SERPINE3	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11148216	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11148217	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11148219	1.00[CEU][hapmap]
rs11838784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs11843641	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12184757	1.00[CEU][hapmap]
rs12584416	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12585171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs12586110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs1413103	1.00[CHB][hapmap]
rs4941699	1.00[CEU][hapmap]
rs4942995	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4942996	1.00[CEU][hapmap]
rs4942997	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4942998	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4942999	1.00[CEU][hapmap]
rs7988157	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs7992891	1.00[CEU][hapmap]
rs7995268	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9563042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9563044	1.00[CEU][hapmap]
rs9563045	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9563047	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9563049	1.00[CEU][hapmap]
rs9563050	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9563055	1.00[CEU][hapmap]
rs9568570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9568572	1.00[CHB][hapmap]
rs9568573	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9568574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9568575	1.00[CHB][hapmap]
rs9568576	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9568578	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9568581	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9568586	1.00[CEU][hapmap]
rs9568589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9568593	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9634685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51900200-51914000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:51900800-51913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51903400-51913600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:51903600-51906200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:51904000-51906600	Enhancers	Primary hematopoietic stem cells	blood
8	chr13:51904000-51906800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:51904000-51907800	Enhancers	Fetal Thymus	thymus
10	chr13:51904400-51905800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr13:51904400-51906200	Enhancers	Osteobl	bone
12	chr13:51904600-51905600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:51904600-51905600	Enhancers	GM12878-XiMat	blood
14	chr13:51904600-51906000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:51904600-51906000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:51904600-51906000	Enhancers	NH-A	brain
17	chr13:51904600-51906200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:51904600-51906200	Enhancers	HSMMtube	muscle
19	chr13:51904600-51907000	Enhancers	Thymus	Thymus
20	chr13:51904600-51907800	Enhancers	Primary T cells from cord blood	blood
21	chr13:51904800-51905600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr13:51904800-51906000	Enhancers	Primary B cells from peripheral blood	blood
23	chr13:51904800-51906000	Enhancers	Spleen	Spleen
24	chr13:51904800-51906000	Enhancers	HMEC	breast
25	chr13:51904800-51906200	Enhancers	Primary B cells from cord blood	blood
26	chr13:51904800-51906400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:51905000-51905800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr13:51905000-51905800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:51905000-51913800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:51905200-51905600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr13:51905200-51905600	Enhancers	Dnd41	blood
32	chr13:51905400-51905800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr13:51905400-51906000	Enhancers	HSMM	muscle
34	chr13:51905400-51906400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr13:51905400-51915200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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