Variant report

Variant	rs17252180
Chromosome Location	chr13:51942530-51942531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:173271131..173271709-chr13:51942042..51942984,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11148219	0.82[JPT][hapmap]
rs1547710	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252193	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252200	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837214	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837215	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837217	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4941699	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4942995	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4942996	0.82[JPT][hapmap]
rs4942999	0.82[JPT][hapmap]
rs57845363	0.81[ASN][1000 genomes]
rs61749884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61749885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330735	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74087486	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7984158	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7992891	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7995478	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7995885	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8000429	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8000433	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8001333	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8002112	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9563049	0.82[JPT][hapmap]
rs9563055	0.82[JPT][hapmap]
rs9568580	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs9568586	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs9568631	0.85[CHB][hapmap]
rs9591402	0.82[JPT][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
2	chr13:51913400-51944600	Weak transcription	Aorta	Aorta
3	chr13:51917600-51943200	Weak transcription	NHLF	lung
4	chr13:51918600-51945000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51919000-51944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:51932000-51945800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:51932000-51947400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr13:51932400-51944400	Weak transcription	Fetal Stomach	stomach
9	chr13:51932600-51944400	Weak transcription	Lung	lung
10	chr13:51932800-51943000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr13:51933400-51945400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr13:51933600-51947600	Weak transcription	Brain Substantia Nigra	brain
13	chr13:51933800-51947400	Weak transcription	Brain Germinal Matrix	brain
14	chr13:51934000-51943400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:51934000-51944400	Weak transcription	Esophagus	oesophagus
16	chr13:51934000-51947000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr13:51934200-51945000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:51934200-51958400	Strong transcription	Placenta	Placenta
19	chr13:51934200-51959800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:51934400-51943400	Strong transcription	Adipose Nuclei	Adipose
21	chr13:51934400-51945800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr13:51934400-51947400	Weak transcription	Psoas Muscle	Psoas
23	chr13:51934400-51963800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr13:51934600-51944400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr13:51934600-51946200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr13:51934600-51955800	Weak transcription	Fetal Intestine Small	intestine
27	chr13:51934800-51944000	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr13:51935000-51949400	Weak transcription	Colonic Mucosa	Colon
29	chr13:51935400-51944000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr13:51935400-51944200	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr13:51935400-51957800	Strong transcription	Fetal Thymus	thymus
32	chr13:51935400-51959600	Strong transcription	GM12878-XiMat	blood
33	chr13:51935600-51954000	Weak transcription	Stomach Mucosa	stomach
34	chr13:51935600-51971400	Weak transcription	Gastric	stomach
35	chr13:51935800-51954800	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr13:51935800-51962000	Strong transcription	Dnd41	blood
37	chr13:51936000-51947600	Weak transcription	Small Intestine	intestine
38	chr13:51936200-51963600	Strong transcription	Liver	Liver
39	chr13:51936400-51943600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:51936400-51966000	Weak transcription	Right Ventricle	heart
41	chr13:51936600-51944000	Weak transcription	Brain Hippocampus Middle	brain
42	chr13:51937000-51949800	Weak transcription	Fetal Brain Male	brain
43	chr13:51937200-51944400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr13:51937400-51953200	Strong transcription	Fetal Intestine Large	intestine
45	chr13:51937400-51961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr13:51937600-51945000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr13:51937600-51947400	Weak transcription	K562	blood
48	chr13:51937600-51954400	Weak transcription	Fetal Heart	heart
49	chr13:51938200-51944400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr13:51938200-51960000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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