Variant report

Variant	rs7995478
Chromosome Location	chr13:52039156-52039157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:52039094-52039582	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52024267..52031024-chr13:52038927..52044194,9	MCF-7	breast:
2	chr13:52033233..52035257-chr13:52037925..52039840,2	K562	blood:

Variant related genes	Relation type
RN7SL320P	TF binding region
ENSG00000236778	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1547710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252166	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17252173	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17252180	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252193	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252200	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837214	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837215	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837216	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837217	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs57845363	0.83[ASN][1000 genomes]
rs61749884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61749885	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74087486	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7984158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7995885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8000429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8000433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8001333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8002112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9563058	1.00[CHB][hapmap]
rs9563062	1.00[CHB][hapmap]
rs9568622	1.00[CHB][hapmap]
rs9568631	1.00[CHB][hapmap]
rs9568632	1.00[AMR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52031000-52039800	Weak transcription	A549	lung
2	chr13:52031000-52044800	Weak transcription	Liver	Liver
3	chr13:52031200-52041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:52031600-52041600	Weak transcription	Pancreas	Pancrea
5	chr13:52031800-52045400	Weak transcription	Primary B cells from cord blood	blood
6	chr13:52038800-52040400	Enhancers	HepG2	liver

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