Variant report

Variant	rs17252173
Chromosome Location	chr13:51897903-51897904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1547710	0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252180	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252193	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252200	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837214	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837215	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837216	0.82[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837217	0.82[CHB][hapmap];0.93[ASN][1000 genomes]
rs61749884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61749885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330735	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74087486	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7984158	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995478	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995885	1.00[EUR][1000 genomes]
rs8000429	1.00[EUR][1000 genomes]
rs8000433	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8001333	1.00[EUR][1000 genomes]
rs8002112	0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9563058	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51889400-51901200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr13:51890000-51899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:51890000-51904800	Weak transcription	Right Atrium	heart
5	chr13:51890200-51899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:51890600-51898400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:51893800-51898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr13:51894000-51898800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:51895600-51898400	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:51895600-51898600	Enhancers	Brain Anterior Caudate	brain
11	chr13:51896200-51898400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr13:51896200-51898600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:51896400-51898400	Weak transcription	Brain Germinal Matrix	brain
14	chr13:51896600-51899400	Enhancers	Brain Hippocampus Middle	brain
15	chr13:51897000-51898800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:51897000-51900400	Enhancers	Brain Substantia Nigra	brain
17	chr13:51897200-51899200	Enhancers	Brain Cingulate Gyrus	brain
18	chr13:51897400-51898400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:51897400-51898600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:51897400-51899200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:51897400-51899400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:51897600-51898000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:51897600-51898400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr13:51897600-51898400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr13:51897600-51898600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:51897600-51904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:51897800-51899200	Weak transcription	Fetal Muscle Trunk	muscle

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