Variant report

Variant	rs8000433
Chromosome Location	chr13:51973364-51973365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51970484..51973482-chr13:52022310..52025240,2	K562	blood:
2	chr13:51970413..51974561-chr13:52025794..52028654,4	K562	blood:
3	chr13:51971731..51974560-chr13:52025702..52028565,2	K562	blood:

Variant related genes	Relation type
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1547710	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252166	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252173	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252180	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252193	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252200	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837214	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837215	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837216	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17837217	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4941699	0.86[CHB][hapmap]
rs4942995	0.86[CHB][hapmap]
rs57845363	0.81[ASN][1000 genomes]
rs61749884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61749885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74087486	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7984158	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7992891	0.86[CHB][hapmap]
rs7995478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7995885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000429	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8001333	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8002112	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9563058	0.85[CHB][hapmap]
rs9563062	0.85[CHB][hapmap]
rs9568580	0.86[CHB][hapmap]
rs9568586	0.86[CHB][hapmap]
rs9568622	0.85[CHB][hapmap]
rs9568631	0.85[CHB][hapmap]
rs9568632	1.00[AMR][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51945800-52016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:51946200-51988000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51949400-52025000	Weak transcription	Fetal Muscle Leg	muscle
4	chr13:51950000-52025200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:51950200-51999800	Weak transcription	Brain Germinal Matrix	brain
6	chr13:51955200-51973600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:51957400-51978200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr13:51957800-51978400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:51957800-51986600	Weak transcription	Fetal Thymus	thymus
10	chr13:51958000-51996800	Weak transcription	Thymus	Thymus
11	chr13:51958200-51990000	Weak transcription	HMEC	breast
12	chr13:51958400-51987800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr13:51959200-51981200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr13:51959800-51989400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:51960000-51973400	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr13:51962000-51976200	Weak transcription	Dnd41	blood
17	chr13:51962200-51979400	Weak transcription	HUVEC	blood vessel
18	chr13:51962200-51989600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr13:51962200-51993200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:51963200-52024800	Weak transcription	Fetal Intestine Large	intestine
21	chr13:51963600-51989800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:51963600-52003600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr13:51966800-51973600	Weak transcription	Primary B cells from cord blood	blood
24	chr13:51968200-51989800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr13:51969600-51995000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr13:51970600-51973800	Enhancers	Hela-S3	cervix
27	chr13:51970800-51973400	Weak transcription	Psoas Muscle	Psoas
28	chr13:51971000-51973600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr13:51971000-51979600	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr13:51971200-51973400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr13:51971400-51973600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr13:51971600-51973400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:51971800-51986600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr13:51971800-51990000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr13:51971800-52025000	Weak transcription	Fetal Stomach	stomach
36	chr13:51972000-51973400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:51972000-51973400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:51972000-51973800	Weak transcription	Primary T cells from cord blood	blood
39	chr13:51972000-51973800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr13:51972000-51974200	Weak transcription	Spleen	Spleen
41	chr13:51972000-51974800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr13:51972000-51975200	Weak transcription	Esophagus	oesophagus
43	chr13:51972000-51976400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr13:51972000-51976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr13:51972000-51976400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr13:51972000-51977400	Weak transcription	Left Ventricle	heart
47	chr13:51972000-51977400	Weak transcription	Right Atrium	heart
48	chr13:51972000-51978000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:51972000-51978000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:51972000-51978000	Weak transcription	Gastric	stomach

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