Variant report

Variant	rs8002112
Chromosome Location	chr13:52048897-52048898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:52024632..52028923-chr13:52048141..52051869,7	MCF-7	breast:
2	chr13:52025759..52029036-chr13:52048504..52052579,4	K562	blood:
3	chr13:52048427..52051082-chr13:52053156..52054989,2	MCF-7	breast:
4	chr13:52025807..52027945-chr13:52048875..52050455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1547710	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17252166	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17252173	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17252180	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17252193	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17252200	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17837214	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17837215	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17837216	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17837217	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4941699	0.89[CHB][hapmap]
rs4942995	0.89[CHB][hapmap]
rs57845363	0.83[ASN][1000 genomes]
rs61749884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61749885	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7330735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74087486	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7984158	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7992891	0.89[CHB][hapmap]
rs7995478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7995885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8000429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8000433	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9568580	0.89[CHB][hapmap]
rs9568586	0.89[CHB][hapmap]
rs9568631	0.86[CHB][hapmap]
rs9568632	1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8002112	Hs.123474	cis	multi-tissue	Pritchard

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52041800-52052600	Weak transcription	Pancreas	Pancrea
2	chr13:52045400-52050000	Weak transcription	Liver	Liver
3	chr13:52045400-52050000	Weak transcription	HepG2	liver

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