Variant report

Variant	rs74087486
Chromosome Location	chr13:51903318-51903319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1547710	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252166	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252173	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17252180	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252193	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17252200	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837215	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837216	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17837217	0.93[ASN][1000 genomes]
rs56734999	0.95[AFR][1000 genomes]
rs61749884	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61749885	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7330735	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74084806	0.93[AFR][1000 genomes]
rs74087485	1.00[AFR][1000 genomes]
rs7984158	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7995478	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7995885	1.00[EUR][1000 genomes]
rs8000429	1.00[EUR][1000 genomes]
rs8000433	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8001333	1.00[EUR][1000 genomes]
rs8002112	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9596501	1.00[AFR][1000 genomes]
rs9596507	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51890000-51904800	Weak transcription	Right Atrium	heart
3	chr13:51897600-51904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:51898600-51904600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:51898600-51904800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:51898600-51904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr13:51899600-51904800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr13:51900200-51904800	Weak transcription	Brain Anterior Caudate	brain
9	chr13:51900200-51914000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr13:51900400-51904600	Weak transcription	GM12878-XiMat	blood
11	chr13:51900400-51904800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:51900400-51904800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:51900800-51913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr13:51901600-51903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:51901600-51904000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr13:51901800-51904000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:51902400-51903400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr13:51902400-51903400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:51902800-51903400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:51903000-51904000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links