Variant report

Variant	rs9596501
Chromosome Location	chr13:51910421-51910422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17837212	1.00[AMR][1000 genomes]
rs2897898	1.00[AMR][1000 genomes]
rs56734999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59315390	1.00[AMR][1000 genomes]
rs59819997	1.00[AMR][1000 genomes]
rs60239593	1.00[AMR][1000 genomes]
rs74084806	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087455	1.00[AMR][1000 genomes]
rs74087457	1.00[AMR][1000 genomes]
rs74087459	1.00[AMR][1000 genomes]
rs74087464	1.00[AMR][1000 genomes]
rs74087466	1.00[AMR][1000 genomes]
rs74087485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087486	1.00[AFR][1000 genomes]
rs9596507	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv3359350	chr13:51910109-51910437	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
2	chr13:51900200-51914000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:51900400-51938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr13:51900800-51913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:51903400-51913600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:51905000-51913800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:51905400-51915200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:51906000-51917200	Weak transcription	HSMM	muscle
9	chr13:51906000-51944400	Weak transcription	Spleen	Spleen
10	chr13:51906200-51935400	Weak transcription	HSMMtube	muscle
11	chr13:51906800-51917200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:51907800-51933200	Weak transcription	Primary T cells from cord blood	blood
13	chr13:51909800-51917200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr13:51910000-51913400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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