Variant report

Variant	rs74087459
Chromosome Location	chr13:51863041-51863042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17837212	1.00[AMR][1000 genomes]
rs2897898	1.00[AMR][1000 genomes]
rs56734999	1.00[AMR][1000 genomes]
rs59315390	1.00[AMR][1000 genomes]
rs59819997	1.00[AMR][1000 genomes]
rs60239593	1.00[AMR][1000 genomes]
rs74084806	1.00[AMR][1000 genomes]
rs74087455	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087464	1.00[AMR][1000 genomes]
rs74087466	1.00[AMR][1000 genomes]
rs74087485	1.00[AMR][1000 genomes]
rs9596501	1.00[AMR][1000 genomes]
rs9596507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51846400-51866400	Weak transcription	Fetal Brain Male	brain
2	chr13:51846600-51865600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:51846600-51865600	Weak transcription	Fetal Lung	lung
4	chr13:51850200-51865600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:51851000-51866400	Weak transcription	Adipose Nuclei	Adipose
6	chr13:51851200-51865600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
8	chr13:51854600-51866800	Weak transcription	Stomach Mucosa	stomach
9	chr13:51855600-51875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:51855800-51866400	Weak transcription	Brain Germinal Matrix	brain
11	chr13:51856600-51865400	Weak transcription	Brain Substantia Nigra	brain
12	chr13:51856600-51865600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:51856800-51865000	Weak transcription	Aorta	Aorta
14	chr13:51857000-51865200	Weak transcription	Colon Smooth Muscle	Colon
15	chr13:51857000-51867000	Weak transcription	Right Ventricle	heart
16	chr13:51857000-51871400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr13:51858200-51865200	Weak transcription	Left Ventricle	heart
18	chr13:51858600-51865600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:51860600-51864800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr13:51860600-51865400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr13:51860600-51865400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr13:51860800-51865000	Weak transcription	Fetal Heart	heart
23	chr13:51860800-51865600	Weak transcription	Brain Anterior Caudate	brain
24	chr13:51860800-51867200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:51861000-51865600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:51861000-51865800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr13:51861800-51865800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr13:51862000-51865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr13:51862000-51866000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr13:51862400-51870800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr13:51862600-51865000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:51862800-51867000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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