Variant report

Variant	rs2897898
Chromosome Location	chr13:51762610-51762611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17837212	1.00[AMR][1000 genomes]
rs56734999	1.00[AMR][1000 genomes]
rs59315390	1.00[AMR][1000 genomes]
rs59819997	1.00[AMR][1000 genomes]
rs60239593	1.00[AMR][1000 genomes]
rs74084806	1.00[AMR][1000 genomes]
rs74087455	1.00[AMR][1000 genomes]
rs74087457	1.00[AMR][1000 genomes]
rs74087459	1.00[AMR][1000 genomes]
rs74087464	1.00[AMR][1000 genomes]
rs74087466	1.00[AMR][1000 genomes]
rs74087485	1.00[AMR][1000 genomes]
rs9596501	1.00[AMR][1000 genomes]
rs9596507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523778	chr13:51755107-51768501	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51750000-51763000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:51750200-51767000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:51754000-51766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:51754600-51770000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51755000-51765600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr13:51756600-51763800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:51759000-51767800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:51761800-51763600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:51761800-51764600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:51761800-51766200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr13:51762400-51765000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:51762600-51765000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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