Variant report

Variant	rs59315390
Chromosome Location	chr13:51870854-51870855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17837212	1.00[AMR][1000 genomes]
rs2897898	1.00[AMR][1000 genomes]
rs56734999	1.00[AMR][1000 genomes]
rs59819997	1.00[AMR][1000 genomes]
rs60239593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74084806	1.00[AMR][1000 genomes]
rs74087455	1.00[AMR][1000 genomes]
rs74087457	1.00[AMR][1000 genomes]
rs74087459	1.00[AMR][1000 genomes]
rs74087464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087485	1.00[AMR][1000 genomes]
rs9596501	1.00[AMR][1000 genomes]
rs9596507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832611	chr13:51766472-51938314	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51853000-51889600	Weak transcription	Brain Angular Gyrus	brain
2	chr13:51855600-51875400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51857000-51871400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:51866200-51871200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:51866200-51871400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:51867200-51871000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:51867200-51871200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:51867200-51873000	Weak transcription	Brain Anterior Caudate	brain
9	chr13:51867400-51872800	Weak transcription	Fetal Stomach	stomach
10	chr13:51867600-51871800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr13:51867600-51872600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:51867600-51910800	Weak transcription	Pancreas	Pancrea
13	chr13:51870600-51871200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr13:51870600-51873000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:51870800-51871800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:51870800-51872000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr13:51870800-51872000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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