Variant report

Variant	rs7984158
Chromosome Location	chr13:52053253-52053254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52051780..52053612-chr13:52158341..52160107,2	MCF-7	breast:
2	chr13:52048427..52051082-chr13:52053156..52054989,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139668	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1547710	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17252166	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17252173	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17252180	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17252193	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17252200	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17837214	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17837215	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17837216	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17837217	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4941699	0.86[CHB][hapmap]
rs4942995	0.86[CHB][hapmap]
rs57845363	0.81[ASN][1000 genomes]
rs61749884	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61749885	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7330735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74087486	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7992891	0.86[CHB][hapmap]
rs7995478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7995885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8000429	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8000433	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8001333	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8002112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9563058	0.85[CHB][hapmap]
rs9563062	0.85[CHB][hapmap]
rs9568580	0.86[CHB][hapmap]
rs9568586	0.86[CHB][hapmap]
rs9568622	0.85[CHB][hapmap]
rs9568631	0.85[CHB][hapmap]
rs9568632	1.00[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52050400-52053800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr13:52050800-52053800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:52052200-52053800	Flanking Active TSS	HepG2	liver
4	chr13:52052600-52053600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:52052600-52053600	Enhancers	Brain Cingulate Gyrus	brain
6	chr13:52052600-52053600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:52052600-52053800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:52052600-52053800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr13:52052600-52053800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:52052600-52053800	Enhancers	NHLF	lung
11	chr13:52052600-52054000	Enhancers	HMEC	breast
12	chr13:52052600-52054000	Enhancers	NHDF-Ad	bronchial
13	chr13:52052800-52053600	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr13:52052800-52053800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:52052800-52053800	Enhancers	NH-A	brain
16	chr13:52052800-52053800	Enhancers	Osteobl	bone
17	chr13:52052800-52054000	Enhancers	HSMM	muscle
18	chr13:52053000-52053400	Active TSS	Brain Anterior Caudate	brain
19	chr13:52053000-52053400	Flanking Active TSS	NHEK	skin
20	chr13:52053000-52053600	Enhancers	Liver	Liver
21	chr13:52053000-52053800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:52053000-52054000	Enhancers	A549	lung
23	chr13:52053200-52053400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr13:52053200-52053400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr13:52053200-52053600	Enhancers	Stomach Mucosa	stomach
26	chr13:52053200-52053800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr13:52053200-52053800	Enhancers	Hela-S3	cervix
28	chr13:52053200-52053800	Enhancers	HUVEC	blood vessel

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