Variant report

Variant	rs9563062
Chromosome Location	chr13:52108614-52108615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52108221..52111487-chr13:52112339..52115268,3	K562	blood:
2	chr13:52026308..52028384-chr13:52105731..52108665,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102786	Chromatin interaction
ENSG00000224892	Chromatin interaction
ENSG00000236778	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12561532	0.98[ASN][1000 genomes]
rs17252200	1.00[MEX][hapmap]
rs17837214	1.00[MEX][hapmap]
rs17837217	1.00[MEX][hapmap]
rs74086205	0.98[ASN][1000 genomes]
rs7984158	0.85[CHB][hapmap]
rs7995478	1.00[CHB][hapmap]
rs8000433	0.85[CHB][hapmap]
rs9563055	0.86[CHB][hapmap]
rs9563058	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568623	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9568624	0.84[ASN][1000 genomes]
rs9568625	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9568631	1.00[CHB][hapmap];0.98[ASN][1000 genomes]
rs9568632	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9568635	0.82[JPT][hapmap]
rs9568640	1.00[TSI][hapmap]
rs9568646	0.82[JPT][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
2	chr13:52100600-52113000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:52106400-52110000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:52106600-52109400	Enhancers	Hela-S3	cervix
5	chr13:52106600-52109600	Enhancers	Primary T cells from cord blood	blood
6	chr13:52106800-52109400	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr13:52106800-52109600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr13:52106800-52109600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr13:52106800-52109600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:52106800-52109600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr13:52106800-52109600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr13:52106800-52110000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr13:52107000-52109000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr13:52107000-52109200	Enhancers	HMEC	breast
15	chr13:52107000-52109200	Enhancers	NHEK	skin
16	chr13:52107000-52109600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr13:52107000-52114000	Weak transcription	Osteobl	bone
18	chr13:52107200-52111400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr13:52107200-52112200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:52107200-52112400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:52107200-52112400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr13:52107200-52112600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr13:52107200-52114200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr13:52107200-52116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr13:52107400-52112800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:52107800-52109000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:52107800-52109200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr13:52108000-52108800	Enhancers	A549	lung
29	chr13:52108000-52109000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr13:52108000-52109000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:52108000-52109000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:52108000-52109200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:52108000-52109200	Enhancers	HSMM	muscle
34	chr13:52108000-52109200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr13:52108000-52109400	Enhancers	Primary B cells from cord blood	blood
36	chr13:52108000-52109400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr13:52108200-52108800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:52108200-52108800	Enhancers	Fetal Muscle Leg	muscle
39	chr13:52108200-52108800	Enhancers	Gastric	stomach
40	chr13:52108200-52108800	Enhancers	Dnd41	blood
41	chr13:52108200-52109000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr13:52108200-52109000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr13:52108200-52109000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:52108200-52109000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr13:52108200-52109200	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr13:52108200-52109200	Enhancers	GM12878-XiMat	blood
47	chr13:52108200-52109200	Enhancers	HSMMtube	muscle
48	chr13:52108200-52109400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr13:52108200-52109400	Enhancers	Brain Cingulate Gyrus	brain
50	chr13:52108200-52109400	Enhancers	Brain Inferior Temporal Lobe	brain

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